Alternatives and similar repositories for quantms:

Users that are interested in quantms are comparing it to the libraries listed below

• yafeng / proteogenomics_python
  python scripts for proteogenomics analysis
  ☆10Updated 5 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆13Updated last month
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆41Updated this week
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆44Updated last week
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated last year
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated 7 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 3 months ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆21Updated 2 years ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆35Updated last month
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆27Updated 7 months ago
• PayneLab / ProteomicsEducation
  ☆29Updated 7 months ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆32Updated 5 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆33Updated this week
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 3 weeks ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆14Updated this week
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆45Updated 2 years ago
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆36Updated last year
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆19Updated 2 months ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆19Updated last year
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆79Updated last year
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆14Updated 3 weeks ago
• pFindStudio / pFind3
  ☆26Updated 2 months ago
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆17Updated 2 months ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆44Updated last year
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆42Updated 2 months ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆68Updated last month
• compomics / meta-proteome-analyzer
  MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
  ☆29Updated 4 years ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆81Updated 2 weeks ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆45Updated 2 months ago
• tbaccata / amica
  amica: an interactive and user-friendly web-based platform for the analysis of proteomics data
  ☆24Updated this week