Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
☆41May 6, 2024Updated 2 years ago
Alternatives and similar repositories for quantms
Users that are interested in quantms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for QC report based on MultiQC framework☆34Updated this week
- quantms workflow for DIANN tool including DIA and DDA analysis☆17Jun 16, 2026Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆81Jul 11, 2026Updated last week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated 3 months ago
- Single cell proteomics data processing☆33Apr 6, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SDRF official validator and converts SDRF to pipeline configuration files☆36Jul 11, 2026Updated last week
- A graph visualisation tool targeted at persistent homology applications.☆12Jul 28, 2020Updated 5 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Jun 5, 2026Updated last month
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Jul 1, 2026Updated 2 weeks ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated last month
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆461Jun 30, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Updated this week
- ☆16May 27, 2026Updated last month
- R package - MSstats☆98Updated this week
- Python client for PRIDE Archive Rest API.☆40Jul 2, 2026Updated 2 weeks ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆13Aug 26, 2022Updated 3 years ago
- Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData repres…☆12Oct 23, 2019Updated 6 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Updated this week
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆22May 4, 2026Updated 2 months ago
- A pipeline to investigate horizontal gene transfer from NGS data☆27Apr 30, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Nov 26, 2024Updated last year
- Layered enrichment analysis tool enables facile enrichment using various statistics at once.☆19Jun 10, 2026Updated last month
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated last month
- Instant Clue - Interactive Data Analysis☆21Apr 9, 2025Updated last year
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆45May 9, 2026Updated 2 months ago
- A pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake …☆17Aug 27, 2025Updated 10 months ago
- ☆14Aug 22, 2022Updated 3 years ago
- Visualize 3D ST data in Jupyter☆15Jun 16, 2026Updated last month
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Jan 13, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19Jun 17, 2026Updated last month
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 7 months ago
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).☆10Apr 15, 2026Updated 3 months ago
- Data Processing Kitchen Sink for proteomics data☆14Jun 15, 2026Updated last month