nf-core / quantmsLinks
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
☆36Updated last year
Alternatives and similar repositories for quantms
Users that are interested in quantms are comparing it to the libraries listed below
Sorting:
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆58Updated 4 years ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated last week
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆38Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆27Updated last month
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated this week
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆21Updated last year
- R package for analysing proteomics data☆49Updated 2 years ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 5 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- ☆41Updated last week
- Absolute quantification package based on quantms.io☆15Updated 4 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 8 months ago
- ☆11Updated 5 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- ☆35Updated last month
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆48Updated 2 years ago
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆62Updated 2 weeks ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated last week
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆72Updated last week
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 4 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Integration ribosome profiling - mass spectrometry☆15Updated last month
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Updated last year
- A guide to running MaxQuant in Linux☆34Updated 5 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated this week
- ☆49Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago