jackhump / leafviz
Just the leafviz parts of Leafcutter
☆13Updated 2 years ago
Alternatives and similar repositories for leafviz:
Users that are interested in leafviz are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ☆38Updated 6 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆34Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 11 months ago
- ☆28Updated 3 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated last month
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- BAGEL software☆27Updated last year
- Explore and download data from the recount3 project☆34Updated 3 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last week
- ☆21Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 3 weeks ago
- Explore the cancer relevance of your gene list☆50Updated last month
- Merge fastq files split over lanes☆20Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- ☆21Updated 4 years ago
- alternative splicing analysis pipeline☆18Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last week