This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir
☆18May 21, 2017Updated 8 years ago
Alternatives and similar repositories for Faucet
Users that are interested in Faucet are comparing it to the libraries listed below
Sorting:
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- ☆15Apr 6, 2016Updated 9 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆16Nov 1, 2021Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Mar 14, 2026Updated last week
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Fast hash function for DNA/RNA sequences☆106Mar 13, 2026Updated last week
- Estimating k-mer coverage histogram of genomics data☆77Mar 13, 2026Updated last week
- A first look at browser-based Cryptojacking☆16Jun 7, 2018Updated 7 years ago
- Diverse sampling for single-cell datasets☆16Jul 23, 2020Updated 5 years ago
- Scanning and visualization for variable gap motifs.☆18Aug 6, 2024Updated last year
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 13, 2025Updated 6 months ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- ☆18Jul 9, 2018Updated 7 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 8 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 7 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Sep 23, 2017Updated 8 years ago
- Compact Tree Representation☆16Mar 16, 2017Updated 9 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 9 months ago
- HTTP based framework for building command and control components for remote access trojans☆15Aug 2, 2021Updated 4 years ago
- compacted de Bruijn graph construction in low memory☆100Nov 4, 2025Updated 4 months ago
- Paytoshi Faucet script☆11May 31, 2016Updated 9 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated last year
- ☆10Jun 9, 2020Updated 5 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆50Nov 6, 2025Updated 4 months ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago