Shamir-Lab / FaucetLinks
This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir
☆18Updated 8 years ago
Alternatives and similar repositories for Faucet
Users that are interested in Faucet are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Convert HAL to VG☆23Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated 3 weeks ago
- Assemble the Genome in a Bottle sequencing data☆10Updated 8 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Updated 3 years ago
- ☆15Updated 5 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 3 weeks ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- Better Alignments with Translated HMMER☆24Updated this week
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- ☆19Updated 2 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- ☆26Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆17Updated 11 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Basecalling configuration prediction through FASTQ files☆32Updated 2 months ago
- ☆15Updated last year