medvedevgroup / varmatch
robust matching of small variant datasets using flexible scoring schemes
☆10Updated 4 years ago
Alternatives and similar repositories for varmatch:
Users that are interested in varmatch are comparing it to the libraries listed below
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- GenoTypes Compressor☆15Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- ☆21Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Sample Contamination Estimate from VCF☆19Updated 3 months ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- What's The Function of these genes?☆22Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago