usnistgov / SVClassifyLinks
Hemang Parikh
☆11Updated 9 years ago
Alternatives and similar repositories for SVClassify
Users that are interested in SVClassify are comparing it to the libraries listed below
Sorting:
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- ☆14Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- extract SV signal from a BAM☆11Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Benchmark structural variant calls against a reference set☆17Updated 8 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- ☆37Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆21Updated 3 months ago