usnistgov / SVClassifyLinks
Hemang Parikh
☆11Updated 9 years ago
Alternatives and similar repositories for SVClassify
Users that are interested in SVClassify are comparing it to the libraries listed below
Sorting:
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- gvcf aggregation tool☆12Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Benchmark structural variant calls against a reference set☆17Updated 7 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 5 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆16Updated 4 months ago
- ☆14Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago
- Population-wide Deletion Calling☆35Updated last month
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago