yunwilliamyu / quartzLinks
☆15Updated 9 years ago
Alternatives and similar repositories for quartz
Users that are interested in quartz are comparing it to the libraries listed below
Sorting:
- Copy number estimation of highly duplicated sequences☆10Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- ☆12Updated 8 years ago
- A configurable de novo assembly pipeline☆28Updated 9 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- ☆37Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 8 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 10 years ago
- reference free variant assembly☆34Updated 2 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 8 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Streaming sequence classification with web services ✓📌☆19Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 9 years ago