walaj / VariantBamLinks
Filtering and profiling of next-generational sequencing data using region-specific rules
☆79Updated 2 years ago
Alternatives and similar repositories for VariantBam
Users that are interested in VariantBam are comparing it to the libraries listed below
Sorting:
- Read visualizer for structural variants☆84Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆74Updated last year
- Structural Variant Index☆75Updated 11 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 4 months ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 3 weeks ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- Data and information about the Polaris study☆54Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- BigWig and BAM utilities☆98Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Toolkit for calling structural variants using short or long reads☆110Updated last month
- Toolkit for processing TAB-delimited format☆62Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆78Updated 11 years ago