walaj / VariantBam
Filtering and profiling of next-generational sequencing data using region-specific rules
☆75Updated last year
Alternatives and similar repositories for VariantBam:
Users that are interested in VariantBam are comparing it to the libraries listed below
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 5 months ago
- ☆39Updated 9 months ago
- Structural Variant Index☆71Updated 2 months ago
- Read visualizer for structural variants☆81Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- Data and information about the Polaris study☆53Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- CNV screening and annotation tool☆24Updated 8 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆57Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆78Updated 10 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated last year
- ☆79Updated 9 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- ☆45Updated 5 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated 2 months ago
- Toolkit for calling structural variants using short or long reads☆100Updated 3 weeks ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Thousand Variant Callers Project Repository☆71Updated 5 years ago