walaj / VariantBam
Filtering and profiling of next-generational sequencing data using region-specific rules
☆77Updated last year
Alternatives and similar repositories for VariantBam:
Users that are interested in VariantBam are comparing it to the libraries listed below
- Structural Variant Index☆72Updated 4 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Read visualizer for structural variants☆83Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Data and information about the Polaris study☆53Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆39Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 8 months ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- ☆78Updated 11 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 6 months ago
- A read extraction and realignment tool for next generation sequencing data☆99Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- ☆53Updated 2 years ago
- processing illumina SNP arrays☆19Updated 8 years ago
- ☆79Updated 2 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- ☆46Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago