walaj / VariantBam
Filtering and profiling of next-generational sequencing data using region-specific rules
☆74Updated last year
Related projects ⓘ
Alternatives and complementary repositories for VariantBam
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 5 months ago
- Structural Variant Index☆69Updated last week
- An awk-like VCF parser☆54Updated 10 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆101Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆65Updated 2 months ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- ☆78Updated 10 years ago
- ☆36Updated 6 months ago
- QDNAseq package for Bioconductor☆48Updated 3 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆45Updated 4 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- R package designed to simplify structural variant analysis☆69Updated 2 years ago
- Data and information about the Polaris study☆52Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Toolkit for calling structural variants using short or long reads☆95Updated 2 weeks ago
- CNV screening and annotation tool☆24Updated 8 years ago
- A read extraction and realignment tool for next generation sequencing data☆99Updated 2 years ago
- ☆79Updated 6 months ago
- Relevant papers for CNV and SV approaches☆94Updated this week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- Tools and software library developed by the ONT Applications group☆61Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated 2 weeks ago
- SV caller for nanopore data☆90Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago