elzbth / jitterbugLinks
Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.
☆17Updated 8 years ago
Alternatives and similar repositories for jitterbug
Users that are interested in jitterbug are comparing it to the libraries listed below
Sorting:
- ☆45Updated 8 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 8 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Evolutionary Transcriptomics with R☆45Updated last week
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- ☆23Updated 9 months ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- ☆51Updated 6 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- ☆30Updated 4 years ago
- ☆21Updated last year
- A tutorial on structural variant calling for short read sequencing data☆39Updated 11 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week