elzbth / jitterbugLinks
Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.
☆17Updated 8 years ago
Alternatives and similar repositories for jitterbug
Users that are interested in jitterbug are comparing it to the libraries listed below
Sorting:
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- ☆45Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- ☆51Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- Evolutionary Transcriptomics with R☆45Updated last week
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- ☆23Updated 10 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- Structural variant merging tool☆55Updated last year
- ☆34Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- ☆21Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- ☆30Updated 4 years ago