Alternatives and similar repositories for Tangram

Users that are interested in Tangram are comparing it to the libraries listed below

• brentp / hts-python

  View on GitHub
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Mar 3, 2017Updated 8 years ago
• jaxcs / Seqnature

  View on GitHub
  Seqnature: incorporate SNPs and Indels into a reference genome
  ☆16Sep 6, 2016Updated 9 years ago
• uio-cels / genomicgraphcoords

  View on GitHub
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11May 2, 2017Updated 8 years ago
• DCGenomics / DangerTrack

  View on GitHub
  ☆13Jun 21, 2017Updated 8 years ago
• bmeg / funnel-client

  View on GitHub
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Feb 7, 2017Updated 9 years ago
• ENCODE-DCC / snovault

  View on GitHub
  The SnoVault general purpose hybrid object-relational database
  ☆16Mar 7, 2024Updated last year
• jtaghiyar / kronos

  View on GitHub
  A workflow assembler for cancer genome analytics and informatics
  ☆19Nov 16, 2016Updated 9 years ago
• yunwilliamyu / quartz

  View on GitHub
  ☆15Mar 7, 2016Updated 9 years ago
• PriceLab / snapr

  View on GitHub
  SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
  ☆25Apr 7, 2015Updated 10 years ago
• enasequence / cramtools

  View on GitHub
  CRAM format specification and java API for read data.
  ☆59Oct 2, 2018Updated 7 years ago
• gkno / gkno_launcher

  View on GitHub
  The gkno launcher for executing tools or pipelines
  ☆31Jan 17, 2017Updated 9 years ago
• nasqar / ClusterProfShinyGSEA

  View on GitHub
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆16Jan 27, 2020Updated 6 years ago
• gt1 / libmaus2

  View on GitHub
  collection of data structures and algorithms
  ☆19Mar 19, 2019Updated 6 years ago
• higlass / higlass-manage

  View on GitHub
  A utility script to manage local docker instances of HiGlass
  ☆24Jul 6, 2023Updated 2 years ago
• glennhickey / progressiveCactus

  View on GitHub
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆88Jun 19, 2018Updated 7 years ago
• KolmogorovLab / minda

  View on GitHub
  ☆27Apr 17, 2025Updated 10 months ago
• quinlan-lab / vcftidy

  View on GitHub
  normalize, left-align, trim, validate and clean VCF files
  ☆20Jul 22, 2015Updated 10 years ago
• davidliwei / rnaseqmut

  View on GitHub
  RNA-Seq Mutation Detection
  ☆28Aug 6, 2021Updated 4 years ago
• jhhung / PEAT

  View on GitHub
  An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
  ☆22Jan 19, 2021Updated 5 years ago
• kauwelab / PolyRiskScore

  View on GitHub
  PRSKB is a website and command-line interface tool for calculating polygenic risk scores using GWA studies from the NHGRI-EBI Catalog.
  ☆30Aug 22, 2024Updated last year
• AmpliconSuite / CoRAL

  View on GitHub
  Reconstruction of focal amplifications with long reads
  ☆23Nov 2, 2025Updated 3 months ago
• yuifu / millefy

  View on GitHub
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Dec 23, 2019Updated 6 years ago
• mjsull / HapFlow

  View on GitHub
  Visualise interstrain recombination from environmental samples.
  ☆26Apr 18, 2019Updated 6 years ago
• johanneskoester / alpaca

  View on GitHub
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Nov 19, 2024Updated last year
• mrocklin / toolz

  View on GitHub
  More tools for Python
  ☆51Oct 11, 2019Updated 6 years ago
• aquaskyline / 16GT

  View on GitHub
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Dec 26, 2023Updated 2 years ago
• mikelove / alpine

  View on GitHub
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Jun 4, 2024Updated last year
• nf-core / circdna

  View on GitHub
  Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…
  ☆31Jun 3, 2025Updated 8 months ago
• dillonl / graphite

  View on GitHub
  Graphite - Graph-based variant adjudication
  ☆28Feb 9, 2021Updated 5 years ago
• vejnar / FONtools

  View on GitHub
  JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage
  ☆13Jun 11, 2025Updated 8 months ago
• csoneson / compcodeR

  View on GitHub
  ☆12Oct 29, 2025Updated 3 months ago
• Coayala / MetaboDirect

  View on GitHub
  A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data
  ☆12Feb 3, 2026Updated 2 weeks ago
• ga4gh / mme-apis

  View on GitHub
  Documentation for the MatchmakerExchange APIs
  ☆34Dec 19, 2023Updated 2 years ago
• Nealelab / UKBB_ldsc

  View on GitHub
  Sample code for ldsc analyses in UKBB
  ☆33May 4, 2023Updated 2 years ago
• bioinform / varsim

  View on GitHub
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆91Oct 3, 2024Updated last year
• roryk / ipython-cluster-helper

  View on GitHub
  Tool to easily start up an IPython cluster on different schedulers.
  ☆146May 1, 2020Updated 5 years ago
• arq5x / grabix

  View on GitHub
  a wee tool for random access into BGZF files.
  ☆86May 10, 2018Updated 7 years ago
• gifford-lab / ec2-launcher-pro

  View on GitHub
  A tool that lauches docker jobs on Amazon EC2.
  ☆10May 7, 2019Updated 6 years ago
• cboursnell / transfuse

  View on GitHub
  Merge transcriptome assemblies
  ☆31Oct 6, 2016Updated 9 years ago