Alternatives and similar repositories for MutSpot

Users that are interested in MutSpot are comparing it to the libraries listed below

• AlexandrovLab / SigProfilerClusters
  Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …
  ☆13Updated 3 months ago
• MahnoorNGondal / scRNA-seq-ICB-cohorts
  This repository contained single-cell RNA-seq datasets with ICB treated patients
  ☆12Updated 11 months ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• ShixiangWang / gcap
  GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…
  ☆20Updated 2 months ago
• marcjwilliams1 / neutralitytestr
  Testing a neutral evolution model on cancer sequencing data
  ☆10Updated 4 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆34Updated 6 months ago
• luisgls / SOPRANO
  SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions
  ☆11Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 4 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆33Updated last month
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated last month
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated 2 weeks ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• salzman-lab / SICILIAN
  ☆23Updated last year
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 3 years ago
• icbi-lab / quanTIseq
  a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data
  ☆18Updated 4 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 6 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 8 months ago
• CompEpigen / ezASCAT
  Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
  ☆12Updated 3 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• single-cell-genetics / singlecell_endodiff_paper
  Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
  ☆15Updated last year
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆35Updated 3 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• dbrg77 / ISSAAC-seq
  ☆18Updated 2 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago