skandlab / MutSpotLinks
☆18Updated 2 years ago
Alternatives and similar repositories for MutSpot
Users that are interested in MutSpot are comparing it to the libraries listed below
Sorting:
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 5 months ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated last year
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Updated 6 months ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆13Updated last year
- Pairwise Hierarchical Model☆20Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Updated 6 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 4 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 3 weeks ago
- ☆23Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- scover☆24Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 6 years ago
- ☆12Updated 6 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- Model-based tumour subclonal deconvolution using population genetics☆34Updated 2 months ago
- Analysis and visualization of RNA-Seq results☆30Updated last month
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- ☆25Updated 3 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 8 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 6 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- Single Cell RNA PolyA Site Discovery☆11Updated last week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago