skandlab / MutSpot
☆15Updated last year
Alternatives and similar repositories for MutSpot:
Users that are interested in MutSpot are comparing it to the libraries listed below
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆21Updated last month
- Pairwise Hierarchical Model☆17Updated 3 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆9Updated 5 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated this week
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
- pipelines to process scRNA-seq data☆11Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- ☆23Updated 2 years ago
- Single-cell RNA Processing Software☆11Updated 6 months ago
- Gene Expression Decomposition and Integration☆18Updated 2 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Code for EpiMap data browser☆14Updated 10 months ago
- ☆12Updated 5 years ago
- GLASS consortium☆13Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- ANS_signature_scoring: A gene expression signature scoring Python package.☆15Updated last week
- Advanced steps of the OSCA book☆12Updated this week
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- ☆17Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- ☆12Updated 11 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- ☆15Updated 2 years ago