markrobinsonuzh / cytofWorkflow
☆16Updated 9 months ago
Alternatives and similar repositories for cytofWorkflow:
Users that are interested in cytofWorkflow are comparing it to the libraries listed below
- Toolkit for Single-Cell Velocity☆54Updated 3 weeks ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆25Updated 6 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆26Updated last year
- Single-cell analysis with non-negative matrix factorization☆42Updated 3 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- Visualise correlation results and test significancies of these☆21Updated 4 years ago
- Identify and correct invalid gene symbols☆57Updated 2 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Cell type pipes for R☆51Updated last year
- R package to visualize scRNA sequencing data.☆20Updated 2 years ago
- Collection of useful methods for single cell analysis☆14Updated 5 months ago
- Shiny app for the analysis of single cell data☆26Updated 3 weeks ago
- Toolbox with R scripts☆38Updated 6 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Explore and share your scRNAseq clustering results☆48Updated last year
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆57Updated 4 years ago
- ☆38Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- ☆27Updated 3 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆20Updated 2 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated 9 months ago