Alternatives and similar repositories for cytofWorkflow

Users that are interested in cytofWorkflow are comparing it to the libraries listed below

• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated last month
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated last month
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• Nanostring-Biostats / GeomxTools
  Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…
  ☆44Updated 3 weeks ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• kordastilab / ImmunoCluster
  ☆27Updated 4 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆36Updated 7 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 weeks ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 2 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆65Updated last week
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆39Updated 3 years ago
• Teichlab / cellity
  ☆37Updated 9 years ago
• romanhaa / cerebroApp
  R package containing the Cerebro application.
  ☆40Updated 3 years ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆63Updated 6 months ago
• neuhausi / single-cell-viewer
  R package to visualize scRNA sequencing data.
  ☆20Updated 3 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 4 months ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆58Updated 4 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• niaid / covid19-time-resolved
  This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…
  ☆15Updated 4 years ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆21Updated last month
• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆29Updated 3 weeks ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 8 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆55Updated last week