Alternatives and similar repositories for cyCONDOR:

Users that are interested in cyCONDOR are comparing it to the libraries listed below

• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆79Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆96Updated last year
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆70Updated 6 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆72Updated 4 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆106Updated last month
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆64Updated 7 months ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆38Updated 11 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 2 years ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆51Updated 5 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆46Updated 3 years ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆61Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆60Updated 4 months ago
• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆26Updated 8 months ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆60Updated 4 years ago
• data2intelligence / CytoSig
  ☆49Updated 5 months ago
• cellgeni / batchbench
  ☆46Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆73Updated 6 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆37Updated 2 years ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 6 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• scverse / anndataR
  AnnData interoperability in R
  ☆71Updated this week
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆61Updated last year
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆93Updated last year
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆59Updated 6 months ago