Alternatives and similar repositories for cyCONDOR

Users that are interested in cyCONDOR are comparing it to the libraries listed below

• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆32Updated 3 weeks ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated last year
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆75Updated 2 months ago
• scverse / anndataR
  AnnData interoperability in R
  ☆138Updated 3 weeks ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆98Updated 4 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆94Updated 3 weeks ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆98Updated last year
• Nanostring-Biostats / CosMx-Analysis-Scratch-Space
  This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…
  ☆89Updated 3 weeks ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆135Updated 5 months ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆100Updated last month
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆71Updated last month
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆113Updated 2 months ago
• Nanostring-Biostats / GeomxTools
  Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…
  ☆46Updated 3 months ago
• ludvigla / semla
  ☆97Updated 3 months ago
• JhuangLab / CytoTree
  A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
  ☆28Updated 5 years ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆92Updated 2 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆113Updated 2 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆86Updated last month
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆141Updated last year
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆132Updated last year
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆46Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆131Updated last year
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆51Updated 3 years ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆109Updated last year
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆81Updated 3 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆103Updated 3 weeks ago
• SingleR-inc / celldex
  Collection of cell type reference datasets.
  ☆61Updated last year
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆29Updated this week
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated last week
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆68Updated last year