lorenzobonaguro / cyCONDOR
Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cytometry data in R.
☆15Updated 2 weeks ago
Alternatives and similar repositories for cyCONDOR:
Users that are interested in cyCONDOR are comparing it to the libraries listed below
- Cell type pipes for R☆51Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 8 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated last month
- Using self-organizing maps for visualization and interpretation of cytometry data☆26Updated last week
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 3 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 6 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Latent Embedding Multivariate Regression☆86Updated 4 months ago
- Normalize CITEseq Data☆65Updated 9 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆62Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆33Updated 4 years ago
- ☆53Updated 4 years ago
- ☆59Updated 5 years ago
- R package for semi-supervised single-cell data integration☆79Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆62Updated 5 months ago
- Pan-Cancer Single Cell Classifier☆66Updated 9 months ago
- Mouse cell atlas☆60Updated 4 years ago
- Mollecular Functional Portraits☆38Updated 11 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆56Updated this week
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- ☆60Updated 4 years ago