☆21Aug 20, 2024Updated last year
Alternatives and similar repositories for scBridge
Users that are interested in scBridge are comparing it to the libraries listed below
Sorting:
- ☆62Jul 13, 2023Updated 2 years ago
- The official implementation for "SANGO".☆11Mar 17, 2024Updated last year
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆32Apr 9, 2025Updated 10 months ago
- monae: multi-modal single-cell integration and imputation☆13Sep 13, 2024Updated last year
- ☆12Apr 3, 2023Updated 2 years ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆12Mar 1, 2025Updated last year
- A novel spatial multi-modal omics framework, named PRototype-Aware Graph Adaptative aggregation (PRAGA) for spatial multi-modal omics ana…☆18May 29, 2025Updated 9 months ago
- ☆62Dec 8, 2025Updated 2 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Jul 13, 2023Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆18Jul 31, 2024Updated last year
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated 11 months ago
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 7 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 6 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Nov 16, 2020Updated 5 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆455Feb 9, 2026Updated 2 weeks ago
- single-cell graph attentional clustering☆13Feb 10, 2022Updated 4 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Dec 19, 2022Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- ☆23Dec 8, 2023Updated 2 years ago
- R package to explore active transposable elements with RNA-seq data☆21Nov 25, 2022Updated 3 years ago
- ☆17Jul 13, 2024Updated last year
- ☆17Jul 19, 2024Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆24Oct 14, 2025Updated 4 months ago
- ☆21Jun 17, 2024Updated last year
- ☆19Feb 20, 2018Updated 8 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- single-cell graph autoencoder☆25Oct 14, 2021Updated 4 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆28Jul 1, 2024Updated last year
- ☆33Jun 12, 2024Updated last year
- ☆24Nov 6, 2021Updated 4 years ago
- ☆27Oct 23, 2024Updated last year
- R package IReNA☆29Nov 13, 2024Updated last year
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago