Fast and accurate DNASeq Variant Calling workflow composed of LUSH-toolkits
☆26Dec 26, 2024Updated last year
Alternatives and similar repositories for LUSH-DNASeq-pipeline
Users that are interested in LUSH-DNASeq-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- ☆31Apr 16, 2023Updated 3 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 7 months ago
- Codes for the lettuce resequencing project in 2020☆31Jun 28, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Feb 20, 2024Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆56Mar 7, 2025Updated last year
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Jun 23, 2026Updated last week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 3 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆74Jun 4, 2026Updated 3 weeks ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- ☆13May 28, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆37Feb 26, 2026Updated 4 months ago
- ☆45Oct 29, 2022Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- ☆15May 22, 2026Updated last month
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 4 months ago
- ☆35Dec 24, 2020Updated 5 years ago
- Fast Approximate Pattern Matching using Search Schemes☆17Mar 27, 2026Updated 3 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated 2 months ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆139Jun 3, 2026Updated 3 weeks ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆49May 12, 2026Updated last month
- ☆20Nov 17, 2025Updated 7 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Jun 6, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated last week
- Genomic sequence aligner☆33May 29, 2026Updated last month
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 4 months ago
- ☆17Jul 25, 2025Updated 11 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆27Oct 2, 2025Updated 8 months ago
- ☆12Jun 12, 2023Updated 3 years ago