Gibbons-Lab / medi
Metagenomic Estimation of Dietary Intake and Content.
☆28Updated last week
Alternatives and similar repositories for medi:
Users that are interested in medi are comparing it to the libraries listed below
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated this week
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated last month
- MAG Circularization Method☆33Updated 2 years ago
- Improvement of metagenome-assembled genomes☆51Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆20Updated 3 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 9 months ago
- KEGG Module Evaluation Tool☆29Updated last year
- Bacterial GWAS analysis☆40Updated this week
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- ☆24Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated this week
- BEAV: Bacterial Element Annotation reVamped☆64Updated 5 months ago
- ☆45Updated last year
- Discover and annotate the virome☆40Updated last week
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- ☆30Updated 2 months ago
- ☆50Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- ☆18Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year