Gibbons-Lab / medi
Metagenomic Estimation of Dietary Intake and Content.
☆11Updated last month
Related projects ⓘ
Alternatives and complementary repositories for medi
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- Prediction of microbial interactions in complex communities☆12Updated 3 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 7 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆12Updated 2 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Identifying misassemblies via deep learning☆11Updated 6 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆21Updated last year
- Quickly get the taxonomy of a genome☆10Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 2 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆11Updated 2 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆29Updated 3 months ago
- A functional profiler for metagenomes using FracMinHash☆13Updated 2 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆11Updated last year
- ☆21Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Resolving Species Level Classification Using Emu☆12Updated 5 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆21Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 3 weeks ago
- ☆16Updated 4 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆18Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Detect contigs of complete circular genomes☆21Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Systematic resistome analysis☆10Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated 6 months ago
- Tools for analyzing trees☆14Updated 11 months ago