Metagenomic Estimation of Dietary Intake and Content.
☆39Jan 29, 2026Updated last month
Alternatives and similar repositories for medi
Users that are interested in medi are comparing it to the libraries listed below
Sorting:
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆25Jan 20, 2025Updated last year
- ☆17Nov 19, 2024Updated last year
- ☆32Jan 27, 2026Updated last month
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 4 months ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- Software for the 2015 Waterloo iGEM Team☆11Oct 19, 2015Updated 10 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆70Jun 6, 2024Updated last year
- From metagenomes to epitopes and beyond☆12Feb 20, 2026Updated last week
- ☆10Nov 24, 2025Updated 3 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 2 months ago
- vaginal microbiota☆12Jan 21, 2025Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Mar 13, 2025Updated 11 months ago
- Public repository for cFMD - curatedFoodMetagenomicData☆32Feb 12, 2026Updated 2 weeks ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- ☆24Dec 5, 2018Updated 7 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated last year
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 3 months ago
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆32May 30, 2023Updated 2 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- A package to run real time analysis of nanopore methylation data.☆20Jan 27, 2026Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆57Apr 29, 2025Updated 10 months ago
- ARG normalization by mapping to the ARO ontology.☆62Jul 30, 2025Updated 7 months ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 7 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 7 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 3 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated 11 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆14Jun 12, 2023Updated 2 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- gutSMASH☆57Oct 3, 2025Updated 4 months ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆47Feb 3, 2026Updated 3 weeks ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 3 years ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆18Feb 4, 2026Updated 3 weeks ago
- Basecalling configuration prediction through FASTQ files☆33Nov 24, 2025Updated 3 months ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆17Jan 24, 2025Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Dec 2, 2022Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Dec 28, 2019Updated 6 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆104Sep 17, 2022Updated 3 years ago