ikmb / TOFU-MAaPOLinks
Nextflow pipeline for the analysis of metagenomic short reads.
☆13Updated 2 months ago
Alternatives and similar repositories for TOFU-MAaPO
Users that are interested in TOFU-MAaPO are comparing it to the libraries listed below
Sorting:
- ☆81Updated last month
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 11 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated last year
- gutSMASH☆55Updated 2 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- Supporting code for uncultivated gut virus manuscript☆77Updated 2 years ago
- Bioinformatics Tools☆90Updated last month
- An R package designed for drawing gene arrow maps☆95Updated 3 months ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- ☆61Updated last year
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- Bioinformatics tool for Locus Visualisation☆151Updated 2 months ago
- Find clustered hits from a BLAST search☆128Updated last month
- Pipeline for major biological analyses.☆36Updated 3 years ago
- ☆64Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- MGnify genome analysis pipeline☆109Updated this week
- Woltka: a versatile meta'omic data classifier☆75Updated 3 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- ☆41Updated 4 years ago
- Pipelines used in the lab.☆15Updated 9 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- A listing of software, tools and databases useful for virome analysis☆58Updated last week
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- CLI tool to annotate genes with KOfam☆87Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆100Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 6 months ago