Alternatives and similar repositories for TOFU-MAaPO:

Users that are interested in TOFU-MAaPO are comparing it to the libraries listed below

• EBI-Metagenomics / mettannotator
  ☆70Updated this week
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 4 months ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated 7 months ago
• ignasrum / hocort
  HoCoRT - Remove specific organisms from sequencing reads
  ☆17Updated 4 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆48Updated 3 months ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆33Updated last year
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• functional-dark-side / agnostos-wf
  ☆45Updated last year
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated last week
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆21Updated last year
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆76Updated last week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆31Updated last month
• liu-congcong / MetaDecoder
  An algorithm for clustering metagenomic sequences.
  ☆36Updated last month
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆53Updated last week
• ziyewang / MetaBinner
  ☆53Updated last year
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 7 months ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆17Updated 6 months ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆44Updated 4 months ago
• allind / EukDetect
  ☆50Updated last year
• ziyewang / COMEBin
  ☆52Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 2 weeks ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆52Updated 5 years ago
• xiaoli-dong / metaerg
  ☆41Updated 4 years ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆57Updated 2 weeks ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆64Updated 6 months ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆39Updated last month
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆74Updated 5 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 3 years ago