Nextflow pipeline for the analysis of metagenomic short reads.
☆13Apr 8, 2026Updated last week
Alternatives and similar repositories for TOFU-MAaPO
Users that are interested in TOFU-MAaPO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From metagenomes to epitopes and beyond☆12Mar 30, 2026Updated 2 weeks ago
- ☆12Sep 19, 2022Updated 3 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 4 years ago
- Tutorials for data science and bioinformatics☆13May 3, 2024Updated last year
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A fast sampling and analysis tool for biomolecules☆16Updated this week
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 2 months ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆14Mar 10, 2020Updated 6 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆91Oct 9, 2025Updated 6 months ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 7 months ago
- ☆11Feb 16, 2021Updated 5 years ago
- Symbulation is a software model of symbiosis built using Empirical☆15Apr 7, 2026Updated last week
- call copy number from WES(WXS)☆11May 10, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ANnotation-based ANalysis of Specific Interactions☆10Oct 10, 2025Updated 6 months ago
- ☆12Aug 6, 2025Updated 8 months ago
- ☆10Jul 13, 2022Updated 3 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- Omics Data Analysis Tools☆14Nov 26, 2024Updated last year
- Microbial marker identification from cross-cohort datasets☆14May 15, 2024Updated last year
- ☆13Jul 21, 2025Updated 8 months ago
- ☆12Apr 6, 2021Updated 5 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago
- 5-day workshop on Metabolomics and Data Analysis☆18Sep 1, 2019Updated 6 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- Python phylogeny tracker for in silico evolution experiments☆11Sep 4, 2025Updated 7 months ago
- Video Annotation Application for MBARI's Media Management (M3) software stack☆18Mar 23, 2026Updated 3 weeks ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆16Mar 31, 2022Updated 4 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆87Mar 12, 2026Updated last month
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Dec 22, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Oct 31, 2022Updated 3 years ago
- Example code from metagenomics book (https://www.gitbook.com/book/kyclark/metagenomics/details)☆18Feb 1, 2019Updated 7 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 5 months ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- ☆14Apr 9, 2026Updated last week
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year