ikmb / TOFU-MAaPOLinks
Nextflow pipeline for the analysis of metagenomic short reads.
☆13Updated 3 months ago
Alternatives and similar repositories for TOFU-MAaPO
Users that are interested in TOFU-MAaPO are comparing it to the libraries listed below
Sorting:
- gutSMASH☆57Updated 4 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last year
- ☆81Updated 2 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- An R package designed for drawing gene arrow maps☆95Updated 4 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- Bioinformatics Tools☆90Updated last week
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- MGnify genome analysis pipeline☆108Updated last month
- StrainFinder☆29Updated 7 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- Bioinformatics tool for Locus Visualisation☆159Updated 2 weeks ago
- Woltka: a versatile meta'omic data classifier☆76Updated 5 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆101Updated last week
- A general metagenomics data mining system focus on robust microbiome research☆58Updated 2 weeks ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆67Updated this week
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Find clustered hits from a BLAST search☆132Updated 3 weeks ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- From metagenomes to epitopes and beyond☆12Updated this week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 8 months ago