Alternatives and similar repositories for KOunt

Users that are interested in KOunt are comparing it to the libraries listed below

• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆37Updated 2 months ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆53Updated last month
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆43Updated 2 years ago
• liaoherui / StrainScan
  High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
  ☆43Updated last year
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆67Updated this week
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆62Updated 4 months ago
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆16Updated last week
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 2 weeks ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆72Updated 2 months ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆24Updated 3 months ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆28Updated 9 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆22Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 5 months ago
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆37Updated last year
• ChrispinChaguza / RCandy
  RCandy: an R package for visualising homologous recombination events in bacterial genomes
  ☆25Updated 3 years ago
• xiaoli-dong / metaerg
  ☆40Updated 4 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆65Updated last month
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆46Updated 3 weeks ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated last month
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆31Updated last month
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 8 months ago
• WatsonLab / MAGpy
  Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
  ☆62Updated 2 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 6 months ago
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆16Updated 4 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆33Updated 11 months ago