From metagenomes to epitopes and beyond
☆12Apr 30, 2026Updated 3 weeks ago
Alternatives and similar repositories for metapep
Users that are interested in metapep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- nf-test utility functions☆12Updated this week
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆27Updated this week
- Workflow management with Nextflow and nf-core☆30Jan 21, 2025Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Nextflow pipeline for the analysis of metagenomic short reads.☆12May 11, 2026Updated 2 weeks ago
- MicrobeRX☆17Aug 11, 2025Updated 9 months ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 4 years ago
- A modest re-desing update for the classic FastQC report.☆29Sep 2, 2025Updated 8 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 2 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 3 months ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆36Updated this week
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Jun 3, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Script to check required packages for Schrödinger suite on Linux machine☆13Mar 23, 2026Updated 2 months ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- ☆14Mar 12, 2026Updated 2 months ago
- Search text files for DNA sequences and their reverse complements☆13Mar 2, 2017Updated 9 years ago
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated 11 months ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Dec 19, 2023Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Jan 11, 2024Updated 2 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆43Jan 29, 2026Updated 3 months ago
- The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimic…☆17May 5, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Learning free energy landscapes using artificial neural networks☆15Nov 30, 2017Updated 8 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆52Mar 26, 2026Updated 2 months ago
- ANnotation-based ANalysis of Specific Interactions☆10Oct 10, 2025Updated 7 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆92Oct 9, 2025Updated 7 months ago
- RNA dependent RNA Polymerase Palmprint Analysis☆12Aug 1, 2024Updated last year
- Pipeline for the identification of (coding) gene structures in draft genomes.☆37May 9, 2024Updated 2 years ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 3 years ago
- Mycobacterial pipeline☆11Sep 11, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- Tools to calculate descriptors from molecular dynamics and it's application to predict drug resistance.☆15Feb 20, 2023Updated 3 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- Omics Data Analysis Tools☆14Nov 26, 2024Updated last year
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 7 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- These are the input files for MD simulation in Gromacs 5.0+☆12Apr 10, 2023Updated 3 years ago