nf-core / metapepLinks
From metagenomes to epitopes and beyond
☆12Updated last week
Alternatives and similar repositories for metapep
Users that are interested in metapep are comparing it to the libraries listed below
Sorting:
- gutSMASH☆55Updated this week
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆76Updated last week
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Nextflow pipeline for the analysis of metagenomic short reads.☆13Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 weeks ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 9 months ago
- MicrobeRX☆11Updated last month
- A package to annotate protein sequences☆59Updated 7 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- ☆41Updated 3 months ago
- ☆31Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆48Updated 9 months ago
- Influenza genome analysis Nextflow workflow☆28Updated 3 weeks ago
- An R package designed for drawing gene arrow maps☆90Updated last week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated this week
- Detect iSNV and construct whole viral genomes from metagenomic samples☆24Updated 2 weeks ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago