indraniel / sff2fastqLinks
extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output
☆36Updated 9 years ago
Alternatives and similar repositories for sff2fastq
Users that are interested in sff2fastq are comparing it to the libraries listed below
Sorting:
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- The Dazzler Data Base☆36Updated 3 months ago
- ☆23Updated 6 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- read cloud assembler☆36Updated 6 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Code for nanopore paper☆33Updated 9 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 5 years ago
- YAMP: Yet Another Metagenomic Pipeline☆59Updated 2 years ago
- ☆62Updated 4 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year