MathOnco / valisLinks
Virtual Alignment of pathoLogy Image Series
☆157Updated 5 months ago
Alternatives and similar repositories for valis
Users that are interested in valis are comparing it to the libraries listed below
Sorting:
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆78Updated last year
- DeeperHistReg - Source Code☆60Updated last year
- Tools to build deep learning pipelines.☆101Updated 6 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆99Updated 4 months ago
- QuPath extension for Segment Anything Model (SAM)☆107Updated 2 months ago
- ☆33Updated 2 months ago
- Toolkit for large-scale whole-slide image processing.☆231Updated 2 weeks ago
- List of pathology feature extractors and foundation models☆128Updated 4 months ago
- Standardized benchmark for computational pathology foundation models.☆75Updated last week
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆52Updated 5 months ago
- Solid Tumor Associative Modeling in Pathology☆79Updated this week
- Histopathology Image Analysis☆92Updated last year
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆133Updated 3 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆92Updated 3 weeks ago
- GrandQC tool for tissue detection and quality control in pathology☆47Updated 2 months ago
- Stain normalization tools for histological analysis and computational pathology☆143Updated 4 months ago
- Re-stained whole slide image alignment☆33Updated last year
- Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms☆30Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆102Updated 6 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- ☆166Updated last month
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated 3 months ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆197Updated last week
- Awesome List of Digital and Computational Pathology Resources☆59Updated 4 months ago
- A pipeline to segment tissue from the background in histological images☆69Updated 2 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆148Updated last year
- Pipeline for computational pathology☆35Updated last year
- Codebase for "A Foundation Model for Cell Segmentation"☆94Updated 2 weeks ago
- ☆55Updated 3 years ago
- multimodal whole slide image registration in a graph structure☆85Updated 11 months ago