MathOnco / valisLinks
Virtual Alignment of pathoLogy Image Series
☆203Updated 7 months ago
Alternatives and similar repositories for valis
Users that are interested in valis are comparing it to the libraries listed below
Sorting:
- List of pathology feature extractors and foundation models☆167Updated this week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆83Updated last year
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆236Updated last month
- Stain normalization tools for histological analysis and computational pathology☆174Updated 2 months ago
- DeeperHistReg - Source Code☆88Updated last year
- Tools to build deep learning pipelines.☆113Updated last year
- ☆36Updated 10 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆113Updated last year
- ☆31Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆109Updated 2 months ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆57Updated last year
- Solid Tumor Associative Modeling in Pathology☆109Updated last week
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated 2 months ago
- Segment Anything for Histopathology☆57Updated 3 months ago
- Awesome List of Digital and Computational Pathology Resources☆103Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆80Updated last month
- Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF☆25Updated 5 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆72Updated 3 years ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated 6 months ago
- Re-stained whole slide image alignment☆36Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆317Updated last month
- Histopathology Image Analysis☆93Updated 2 years ago
- Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms☆39Updated last week
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆356Updated 6 months ago
- Standardized benchmark for computational pathology foundation models.☆128Updated 2 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆37Updated 11 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆263Updated 2 years ago
- Pipeline for computational pathology☆37Updated 2 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆27Updated 5 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆171Updated 2 months ago