MathOnco / valisLinks
Virtual Alignment of pathoLogy Image Series
☆178Updated 3 months ago
Alternatives and similar repositories for valis
Users that are interested in valis are comparing it to the libraries listed below
Sorting:
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- ☆36Updated 6 months ago
- DeeperHistReg - Source Code☆71Updated last year
- List of pathology feature extractors and foundation models☆153Updated 3 months ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆213Updated last month
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆106Updated 8 months ago
- QuPath extension for Segment Anything Model (SAM)☆121Updated 2 months ago
- Tools to build deep learning pipelines.☆109Updated 10 months ago
- GrandQC tool for tissue detection and quality control in pathology☆65Updated 7 months ago
- Stain normalization tools for histological analysis and computational pathology☆152Updated 8 months ago
- Re-stained whole slide image alignment☆35Updated last year
- Solid Tumor Associative Modeling in Pathology☆86Updated last week
- Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF☆23Updated last month
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated last month
- Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms☆36Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆106Updated 10 months ago
- Awesome List of Digital and Computational Pathology Resources☆79Updated 8 months ago
- ☆26Updated 10 months ago
- ☆147Updated 2 months ago
- Standardized benchmark for computational pathology foundation models.☆102Updated 2 months ago
- Image-translation-assisted segmentation in 3D☆26Updated 3 years ago
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆322Updated 2 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 7 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆80Updated last year
- Codebase for "A Foundation Model for Cell Segmentation"☆110Updated this week
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆141Updated 7 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆262Updated last year
- First commit☆63Updated 3 years ago
- Pipeline for computational pathology☆38Updated last year
- Toolkit for large-scale whole-slide image processing.☆377Updated 2 weeks ago