Bayer-Group / tiffslide
TiffSlide - cloud native openslide-python replacement based on tifffile
☆100Updated 2 months ago
Alternatives and similar repositories for tiffslide:
Users that are interested in tiffslide are comparing it to the libraries listed below
- Whole Slide image (WSI) conversion for brightfield histology images☆36Updated last month
- A Girder plugin for pathology image annotations and analysis.☆70Updated last week
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆32Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆100Updated 5 months ago
- HistoQC is an open-source quality control tool for digital pathology slides☆290Updated 4 months ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆120Updated this week
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 4 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆69Updated 9 months ago
- Virtual Alignment of pathoLogy Image Series☆156Updated 4 months ago
- ⚡ Open-source software for deep learning-based digital pathology☆134Updated 10 months ago
- An open-source digital pathology based rapid image annotation tool☆77Updated last week
- Stain normalization tools for histological analysis and computational pathology☆138Updated 3 months ago
- Pipeline for computational pathology☆35Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 10 months ago
- Interactive Segmentation of Nucleus☆63Updated 2 years ago
- Delete the label from a whole-slide image☆64Updated 4 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆253Updated last year
- multimodal whole slide image registration in a graph structure☆85Updated 10 months ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆54Updated last year
- Python library for converting WSI files to DICOM☆71Updated last week
- ☆32Updated last month
- List of pathology feature extractors and foundation models☆119Updated 3 months ago
- QuPath extension for Segment Anything Model (SAM)☆107Updated last month
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- Python 3 library for the augmentation & normalization of H&E images☆54Updated 2 years ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆31Updated last year
- Interpretable Gland-Graph Networks☆21Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- Python package for reading DICOM WSI file sets.☆43Updated last week
- ☆58Updated 7 months ago