Alternatives and similar repositories for tiffslide

Users that are interested in tiffslide are comparing it to the libraries listed below

• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆37Updated this week
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆72Updated this week
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆124Updated this week
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆162Updated 6 months ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆117Updated 6 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆71Updated 11 months ago
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆33Updated last year
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆109Updated 3 months ago
• imi-bigpicture / wsidicom
  Python package for reading DICOM WSI file sets.
  ☆44Updated 2 weeks ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆102Updated 7 months ago
• choosehappy / HistoQC
  HistoQC is an open-source quality control tool for digital pathology slides
  ☆296Updated 6 months ago
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆32Updated 10 months ago
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆134Updated last year
• pearcetm / svs-deidentifier
  Strip potentially identifying label and macro images from Aperio SVS whole slide image files
  ☆32Updated last year
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆87Updated 11 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆35Updated last year
• impromptuRong / hd_wsi
  ☆35Updated 3 months ago
• amspath / slidescape
  ☆26Updated last week
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆78Updated last week
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated last year
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆75Updated 2 weeks ago
• BiomedSciAI / histocartography
  A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…
  ☆254Updated last year
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆56Updated 2 years ago
• kaiko-ai / eva
  Evaluation framework for oncology foundation models (FMs)
  ☆106Updated this week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆95Updated last month
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆145Updated 5 months ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆49Updated 3 months ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆92Updated 3 weeks ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆72Updated 5 months ago