Alternatives and similar repositories for tiffslide

Users that are interested in tiffslide are comparing it to the libraries listed below

• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆37Updated 3 weeks ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆38Updated 2 years ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆133Updated 5 months ago
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆79Updated last month
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆133Updated last week
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆205Updated 7 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆100Updated last year
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆34Updated 5 months ago
• Booritas / slideio
  ☆73Updated this week
• choosehappy / HistoQC
  HistoQC is an open-source quality control tool for digital pathology slides
  ☆318Updated 2 months ago
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆141Updated last year
• impromptuRong / hd_wsi
  ☆36Updated 10 months ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆126Updated last week
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆90Updated 2 weeks ago
• BiomedSciAI / histocartography
  A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…
  ☆265Updated 2 years ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆174Updated 3 months ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆35Updated 5 months ago
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆81Updated 2 months ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆41Updated last month
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆103Updated last month
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆110Updated 3 months ago
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆174Updated 2 months ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆64Updated 3 years ago
• markowetzlab / pathml
  A Python library for deep learning on whole-slide images
  ☆52Updated 4 years ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆113Updated last year
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆34Updated 3 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆37Updated 2 years ago