stardist / stardist-imagej
StarDist plugin for ImageJ
☆27Updated 2 years ago
Alternatives and similar repositories for stardist-imagej:
Users that are interested in stardist-imagej are comparing it to the libraries listed below
- ☆16Updated this week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 5 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆34Updated 2 months ago
- QuPath extension for Cellsparse☆18Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- ImageJ plugins to run ilastik workflows☆23Updated 2 weeks ago
- ☆15Updated 6 months ago
- ☆24Updated last month
- Accurate and efficient spot detection for microscopy data☆68Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week
- Multiple file format reading directly into napari using pure Python☆35Updated 6 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 years ago
- Browse your OMERO database from within napari.☆35Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆32Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆51Updated 3 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- StarDist plugin for napari☆37Updated 5 months ago
- MethodsJ2☆14Updated 2 years ago
- ☆68Updated 2 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year