daangeijs / simple_wsi_viewer
A simple web application for for viewing and navigating pathology whole-slide-images in your browser.
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for simple_wsi_viewer
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆46Updated 2 years ago
- Pipeline for computational pathology☆34Updated 10 months ago
- ☆53Updated last month
- 🔬 Code-free deep segmentation for computational pathology☆52Updated 5 months ago
- Interactive Segmentation of Nucleus☆61Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- ☆12Updated last year
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆59Updated 4 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆28Updated 9 months ago
- Coincides with blogpost for using geojson and shapely☆29Updated 4 years ago
- GPU-accelerated stain normalization command line tool☆19Updated last year
- ☆35Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- A tool for rapidly labeling objects using deep learning feature embedding☆27Updated 3 months ago
- An open-source digital pathology based rapid image annotation tool☆74Updated this week
- 🚀 H2G-Net: Segmentation of breast cancer region from whole slide images☆22Updated last week
- Python 3 library for the augmentation & normalization of H&E images☆51Updated 2 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆28Updated 2 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆17Updated 5 years ago
- Solid Tumor Associative Modeling in Pathology☆47Updated 2 months ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆65Updated last year
- Re-stained whole slide image alignment☆31Updated last year
- ☆43Updated 2 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆22Updated 2 months ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆27Updated 6 months ago
- ☆10Updated 2 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆93Updated 2 weeks ago
- Pytorch implementation of NuClick for interactive cell segmentation☆26Updated 7 months ago
- Toolbox for measuring adversarial robustness to many transforms☆19Updated 2 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆49Updated last year