Alternatives and similar repositories for simple_wsi_viewer

Users that are interested in simple_wsi_viewer are comparing it to the libraries listed below

• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆33Updated 5 years ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆57Updated 2 years ago
• DIAGNijmegen / pathology-hooknet
  ☆66Updated last year
• kmboehm / orpheus
  ☆15Updated 9 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆106Updated last month
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆38Updated last year
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆26Updated last week
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆38Updated last year
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated this week
• computationalpathologygroup / hooknet
  ☆13Updated last year
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆62Updated 3 years ago
• SHIDCenter / PathoNet
  ☆36Updated 2 years ago
• pearcetm / svs-deidentifier
  Strip potentially identifying label and macro images from Aperio SVS whole slide image files
  ☆36Updated last year
• masih4 / DigiPathoImageAnalysis
  List of academic institutes/companies working on computer-based digital pathology image analysis
  ☆45Updated 4 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• KatherLab / HIA
  Histopathology Image Analysis
  ☆93Updated 2 years ago
• huangzhii / IMPRESS
  ☆20Updated 2 years ago
• secrierlab / HistoMIL
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆29Updated last year
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆88Updated 3 weeks ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆74Updated 11 months ago
• lucasrla / wsi-tile-cleanup
  Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning
  ☆30Updated 5 years ago
• alexjfoote / reetoolbox
  Toolbox for measuring adversarial robustness to many transforms
  ☆19Updated 7 months ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆66Updated 3 years ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆55Updated 3 years ago
• SarderLab / extract-xml-region
  A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope
  ☆12Updated 5 years ago
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆77Updated last week
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆70Updated 3 years ago
• lucasrla / wsi-preprocessing
  Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
  ☆56Updated 2 years ago
• mostafajahanifar / awesome-dg-cpath
  Awesome Domain Generalization for Computational Pathology
  ☆20Updated last year