DigitalSlideArchive / HistomicsTK
A Python toolkit for pathology image analysis algorithms.
☆411Updated last week
Alternatives and similar repositories for HistomicsTK:
Users that are interested in HistomicsTK are comparing it to the libraries listed below
- HistoQC is an open-source quality control tool for digital pathology slides☆283Updated 2 months ago
- Python Whole Slide Image Preprocessing☆276Updated 2 years ago
- ☆343Updated 3 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆160Updated 7 months ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆171Updated 3 years ago
- DeepLearning - Camelyon16 dataset☆119Updated 6 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆405Updated this week
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆207Updated 5 years ago
- Python bindings to OpenSlide☆383Updated last month
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆556Updated last year
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆249Updated last year
- A Girder plugin for pathology image annotations and analysis.☆65Updated 2 weeks ago
- Tools for tissue image stain normalisation and augmentation in Python 3☆325Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆130Updated last month
- Library for Digital Pathology Image Processing☆394Updated this week
- PAthological QUpath Obsession - QuPath and Python conversations☆113Updated 2 months ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆188Updated 2 weeks ago
- ⚡ Open-source software for deep learning-based digital pathology☆130Updated 8 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆97Updated 3 months ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆103Updated 5 years ago
- Pretrained model for self supervised histopathology☆111Updated 2 years ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆129Updated 3 years ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆631Updated last year
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆501Updated 8 months ago
- Virtual Alignment of pathoLogy Image Series☆145Updated 2 months ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆112Updated this week
- Implementation of Camelyon'16 grand challenge☆183Updated 6 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 2 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆123Updated 2 years ago