DigitalSlideArchive / HistomicsTK
A Python toolkit for pathology image analysis algorithms.
☆395Updated last week
Related projects ⓘ
Alternatives and complementary repositories for HistomicsTK
- HistoQC is an open-source quality control tool for digital pathology slides☆266Updated 2 months ago
- Python Whole Slide Image Preprocessing☆272Updated 2 years ago
- Python bindings to OpenSlide☆374Updated 3 weeks ago
- ☆343Updated 3 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆207Updated 5 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆161Updated 3 months ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆538Updated last year
- Program for the analysis and visualization of whole-slide images in digital pathology☆618Updated last year
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆173Updated 3 weeks ago
- Tools for tissue image stain normalisation and augmentation in Python 3☆321Updated 3 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆386Updated this week
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆241Updated 11 months ago
- Stain normalization tools for histological analysis and computational pathology☆118Updated 7 months ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆170Updated 3 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆121Updated 2 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆110Updated last week
- DeepLearning - Camelyon16 dataset☆116Updated 6 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆491Updated 5 months ago
- Library for Digital Pathology Image Processing☆379Updated this week
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- A Girder plugin for pathology image annotations and analysis.☆57Updated this week
- A pipeline to segment tissue from the background in histological images☆66Updated last year
- Virtual Alignment of pathoLogy Image Series☆123Updated 3 months ago
- Pretrained model for self supervised histopathology☆109Updated 2 years ago
- C library for reading virtual slide images☆408Updated 3 weeks ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆100Updated 5 years ago
- The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.☆308Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆93Updated this week
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆128Updated 5 years ago
- Full package for applying deep learning to virtual slides.☆67Updated 6 years ago