arjvik / QuPath-Scripting-ToolsLinks
Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more information)
☆17Updated 5 years ago
Alternatives and similar repositories for QuPath-Scripting-Tools
Users that are interested in QuPath-Scripting-Tools are comparing it to the libraries listed below
Sorting:
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- ☆27Updated 5 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- Bio-Formats image file format to raw format converter☆97Updated 3 weeks ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆79Updated last month
- StarDist plugin for ImageJ☆30Updated 3 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆122Updated last month
- Piecewise alignment for layers of mosaics☆29Updated last month
- Raw format to OME-TIFF converter☆55Updated 3 weeks ago
- QuPath extension for Cellsparse☆19Updated 5 months ago
- ☆85Updated 6 months ago
- multimodal whole slide image registration in a graph structure☆94Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆151Updated last month
- QuPath extension for Segment Anything Model (SAM)☆120Updated 2 months ago
- The official QuPath extension for InstanSeg☆25Updated last month
- StarDist plugin for napari☆39Updated last year
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆26Updated 2 years ago
- Lab for quantitative bioimage analysis experiments in Python☆16Updated last week
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆62Updated 4 months ago
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆12Updated 3 years ago
- A relabeling tool for tiled segmentation with Dask☆15Updated last year
- ☆185Updated 2 months ago
- ImageJ plugins to run ilastik workflows☆25Updated last month
- Accurate and efficient spot detection for microscopy data☆100Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- ☆34Updated last year
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆31Updated 3 months ago