arjvik / QuPath-Scripting-ToolsLinks
Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more information)
☆17Updated 4 years ago
Alternatives and similar repositories for QuPath-Scripting-Tools
Users that are interested in QuPath-Scripting-Tools are comparing it to the libraries listed below
Sorting:
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Piecewise alignment for layers of mosaics☆25Updated last month
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- Raw format to OME-TIFF converter☆53Updated 3 weeks ago
- ☆26Updated last month
- PAthological QUpath Obsession - QuPath and Python conversations☆117Updated 6 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Bio-Formats image file format to raw format converter☆92Updated 3 weeks ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆72Updated last month
- QuPath extension for Cellsparse☆18Updated last month
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 4 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆25Updated 2 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆87Updated 11 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated last month
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- Segment Anything for Histopathology☆33Updated last week
- A relabeling tool for tiled segmentation with Dask☆16Updated 9 months ago
- ☆81Updated 3 months ago
- ☆33Updated last year
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 2 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆71Updated 11 months ago
- QuPath extension for Segment Anything Model (SAM)☆109Updated 3 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- QuPath extension to run StarDist nucleus detection☆40Updated this week
- Evaluating the quality of a cell segmentation method without reference.☆12Updated last month
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆16Updated last year
- ☆16Updated 4 months ago