arjvik / QuPath-Scripting-Tools
Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more information)
☆16Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for QuPath-Scripting-Tools
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- ☆23Updated 2 months ago
- Piecewise alignment for layers of mosaics☆20Updated 2 weeks ago
- QuPath extension for Cellsparse☆15Updated 4 months ago
- Raw format to OME-TIFF converter☆49Updated last week
- PAthological QUpath Obsession - QuPath and Python conversations☆105Updated 4 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆45Updated 3 weeks ago
- QuPath extension to interactively align images☆19Updated 3 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated last year
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆65Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆78Updated 4 months ago
- Bio-Formats image file format to raw format converter☆82Updated last week
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆22Updated 2 months ago
- StarDist plugin for ImageJ☆27Updated 2 years ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 3 years ago
- ☆29Updated 11 months ago
- ImageJ plugins to run ilastik workflows☆23Updated 4 months ago
- QuPath extension for Segment Anything Model (SAM)☆92Updated 2 months ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆18Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆25Updated 3 weeks ago
- ☆13Updated 2 months ago
- QuPath extension to run StarDist nucleus detection☆35Updated 2 months ago
- ☆20Updated 7 months ago
- Development of PICASSO plugin for napari☆13Updated last year
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆11Updated 2 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆29Updated 3 years ago
- ☆116Updated this week