BiomedSciAI / histocartographyLinks
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
☆261Updated last year
Alternatives and similar repositories for histocartography
Users that are interested in histocartography are comparing it to the libraries listed below
Sorting:
- Pretrained model for self supervised histopathology☆120Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆155Updated 9 months ago
- List of pathology feature extractors and foundation models☆154Updated 4 months ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated this week
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆322Updated 3 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆158Updated last year
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆140Updated 3 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆215Updated last month
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆227Updated 2 years ago
- Tools to build deep learning pipelines.☆109Updated 11 months ago
- Virtual Alignment of pathoLogy Image Series☆185Updated 4 months ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆477Updated this week
- First commit☆63Updated 3 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆175Updated 3 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆154Updated last year
- Toolkit for large-scale whole-slide image processing.☆393Updated last month
- Standardized benchmark for computational pathology foundation models.☆107Updated 2 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆108Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆83Updated last year
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆141Updated 8 months ago
- ☆57Updated 3 years ago
- This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…☆34Updated 9 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated this week
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 8 months ago
- Histopathology Slides Preprocessing Pipeline☆42Updated 7 months ago