A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
☆267Dec 23, 2023Updated 2 years ago
Alternatives and similar repositories for histocartography
Users that are interested in histocartography are comparing it to the libraries listed below
Sorting:
- ☆71Jun 15, 2021Updated 4 years ago
- Code for replicating results presented in the paper: "Quantifying Explainers of Graph Neural Networks in Computational Pathology"☆45May 19, 2021Updated 4 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆143Jun 9, 2022Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆111Nov 8, 2025Updated 3 months ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆511Updated this week
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆68Nov 3, 2022Updated 3 years ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆615Mar 19, 2024Updated last year
- ☆68Sep 23, 2024Updated last year
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 3 years ago
- Open source tools for computational pathology - Nature BME☆1,617Apr 14, 2025Updated 10 months ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆161May 14, 2024Updated last year
- Data and code to accompany our Nature publication☆48May 3, 2022Updated 3 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Dec 10, 2025Updated 2 months ago
- Tools for computational pathology☆441Oct 24, 2025Updated 4 months ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆111Jun 9, 2023Updated 2 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆690Oct 27, 2023Updated 2 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆332Aug 22, 2022Updated 3 years ago
- Library for Digital Pathology Image Processing☆443Updated this week
- Powerful, open-source AI tools for digital pathology.☆353Nov 13, 2025Updated 3 months ago
- Toolkit for large-scale whole-slide image processing.☆495Updated this week
- DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image☆457Apr 29, 2024Updated last year
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆164Jan 29, 2024Updated 2 years ago
- A graph-transformer for whole slide image classification☆180Jun 17, 2024Updated last year
- An open-source digital pathology based rapid image annotation tool☆90Feb 26, 2026Updated last week
- ☆57Jan 18, 2022Updated 4 years ago
- A Python toolkit for pathology image analysis algorithms.☆466Updated this week
- Pipeline for computational pathology☆37Jan 4, 2024Updated 2 years ago
- TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification☆462May 3, 2024Updated last year
- ☆350Mar 29, 2025Updated 11 months ago
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023☆117Jun 19, 2023Updated 2 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- Virtual Alignment of pathoLogy Image Series☆209Jun 25, 2025Updated 8 months ago
- Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021☆237Mar 11, 2022Updated 3 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆85Jul 11, 2024Updated last year
- Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024☆161Nov 19, 2024Updated last year
- Stain normalization tools for histological analysis and computational pathology☆177Nov 13, 2025Updated 3 months ago
- Histopathology Image Analysis☆93Jul 6, 2023Updated 2 years ago
- Ressources of histopathology datasets☆530Nov 25, 2025Updated 3 months ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆114Feb 22, 2025Updated last year