A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
☆269Dec 23, 2023Updated 2 years ago
Alternatives and similar repositories for histocartography
Users that are interested in histocartography are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆72Jun 15, 2021Updated 4 years ago
- Code for replicating results presented in the paper: "Quantifying Explainers of Graph Neural Networks in Computational Pathology"☆44May 19, 2021Updated 4 years ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆68Nov 3, 2022Updated 3 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆143Jun 9, 2022Updated 3 years ago
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆526Updated this week
- Open source tools for computational pathology - Nature BME☆1,668Apr 14, 2025Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆114Nov 8, 2025Updated 5 months ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆619Mar 19, 2024Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆324Apr 13, 2026Updated 3 weeks ago
- ☆71Sep 23, 2024Updated last year
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆169May 14, 2024Updated last year
- Data and code to accompany our Nature publication☆48May 3, 2022Updated 4 years ago
- Tools for computational pathology☆450Apr 14, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆707Oct 27, 2023Updated 2 years ago
- Powerful, open-source AI tools for digital pathology.☆360Nov 13, 2025Updated 5 months ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆112Jun 9, 2023Updated 2 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆330Aug 22, 2022Updated 3 years ago
- A graph-transformer for whole slide image classification☆181Jun 17, 2024Updated last year
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023☆119Jun 19, 2023Updated 2 years ago
- Library for Digital Pathology Image Processing☆456Apr 27, 2026Updated last week
- Toolkit for large-scale whole-slide image processing.☆546Updated this week
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆169Jan 29, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image☆463Apr 29, 2024Updated 2 years ago
- Pipeline for computational pathology☆40Jan 4, 2024Updated 2 years ago
- ☆58Jan 18, 2022Updated 4 years ago
- ☆358Mar 29, 2025Updated last year
- Virtual Alignment of pathoLogy Image Series☆216Jun 25, 2025Updated 10 months ago
- Ressources of histopathology datasets☆543Mar 6, 2026Updated 2 months ago
- TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification☆482May 3, 2024Updated 2 years ago
- A Python toolkit for pathology image analysis algorithms.☆470Apr 6, 2026Updated last month
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An open-source digital pathology based rapid image annotation tool☆90Apr 28, 2026Updated last week
- Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors☆17Jun 15, 2023Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆86Jul 11, 2024Updated last year
- Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024☆166Nov 19, 2024Updated last year
- Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021☆244Mar 11, 2022Updated 4 years ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆671Sep 12, 2023Updated 2 years ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆113Feb 22, 2025Updated last year