BiomedSciAI / histocartographyLinks
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
☆257Updated last year
Alternatives and similar repositories for histocartography
Users that are interested in histocartography are comparing it to the libraries listed below
Sorting:
- Pretrained model for self supervised histopathology☆120Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆149Updated 6 months ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- List of pathology feature extractors and foundation models☆143Updated last month
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆312Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆104Updated 8 months ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆219Updated 2 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆174Updated 3 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆156Updated last year
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆452Updated this week
- First commit☆62Updated 3 years ago
- Standardized benchmark for computational pathology foundation models.☆91Updated last month
- Virtual Alignment of pathoLogy Image Series☆171Updated last month
- Toolkit for large-scale whole-slide image processing.☆310Updated last week
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆140Updated 3 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆154Updated last year
- Tools to build deep learning pipelines.☆104Updated 8 months ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆205Updated last week
- HistoQC is an open-source quality control tool for digital pathology slides☆299Updated last week
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆68Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆58Updated 2 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆80Updated last year
- ☆55Updated 3 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 5 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 6 months ago
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆138Updated 5 months ago
- Powerful, open-source AI tools for digital pathology.☆318Updated 2 weeks ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆107Updated 2 years ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆66Updated 2 years ago