BiomedSciAI / histocartographyLinks
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
☆261Updated last year
Alternatives and similar repositories for histocartography
Users that are interested in histocartography are comparing it to the libraries listed below
Sorting:
- Stain normalization tools for histological analysis and computational pathology☆159Updated 2 weeks ago
- Pretrained model for self supervised histopathology☆120Updated 3 years ago
- List of pathology feature extractors and foundation models☆155Updated 5 months ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆228Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last week
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆324Updated 3 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆176Updated 4 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆225Updated 2 weeks ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆141Updated 3 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆484Updated this week
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆157Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆160Updated last year
- Virtual Alignment of pathoLogy Image Series☆188Updated 4 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆84Updated last year
- First commit☆63Updated 3 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 9 months ago
- Tools to build deep learning pipelines.☆110Updated last year
- Toolkit for large-scale whole-slide image processing.☆415Updated this week
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated this week
- Library for Digital Pathology Image Processing☆425Updated this week
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆143Updated 8 months ago
- ☆57Updated 3 years ago
- Solid Tumor Associative Modeling in Pathology☆98Updated last week
- Standardized benchmark for computational pathology foundation models.☆111Updated last week
- Powerful, open-source AI tools for digital pathology.☆333Updated last month
- Histopathology Slides Preprocessing Pipeline☆42Updated 7 months ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆108Updated 2 years ago