A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
☆275Dec 23, 2023Updated 2 years ago
Alternatives and similar repositories for histocartography
Users that are interested in histocartography are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆72Jun 15, 2021Updated 5 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆146Jun 9, 2022Updated 4 years ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆68Nov 3, 2022Updated 4 years ago
- Code for replicating results presented in the paper: "Quantifying Explainers of Graph Neural Networks in Computational Pathology"☆45May 19, 2021Updated 5 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆563Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆77Sep 23, 2024Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆119Nov 8, 2025Updated 11 months ago
- Open source tools for computational pathology - Nature BME☆1,766Apr 14, 2025Updated last year
- Tools for computational pathology☆468Aug 14, 2026Updated 2 months ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆621Mar 19, 2024Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆332Sep 16, 2026Updated last month
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 4 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆173May 14, 2024Updated 2 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆114Jun 9, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Powerful, open-source AI tools for digital pathology.☆376Oct 5, 2026Updated last month
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆757Oct 27, 2023Updated 3 years ago
- Library for Digital Pathology Image Processing☆467Updated this week
- Toolkit for large-scale whole-slide image processing.☆651Oct 12, 2026Updated 3 weeks ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆329Aug 22, 2022Updated 4 years ago
- Ressources of histopathology datasets☆575Mar 6, 2026Updated 7 months ago
- A graph-transformer for whole slide image classification☆183Jun 17, 2024Updated 2 years ago
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023☆120Jun 19, 2023Updated 3 years ago
- Data and code to accompany our Nature publication☆49May 3, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- First commit☆68Jul 5, 2022Updated 4 years ago
- ☆363Mar 29, 2025Updated last year
- Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors☆18Jun 15, 2023Updated 3 years ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆158Feb 5, 2026Updated 9 months ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆169Jan 29, 2024Updated 2 years ago
- DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image☆466Apr 29, 2024Updated 2 years ago
- A Python toolkit for pathology image analysis algorithms.☆492Oct 30, 2026Updated last week
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆265Aug 31, 2026Updated 2 months ago
- ☆59Jan 18, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Virtual Alignment of pathoLogy Image Series☆247Jun 25, 2025Updated last year
- Program for the analysis and visualization of whole-slide images in digital pathology☆688Sep 12, 2023Updated 3 years ago
- Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021☆260Mar 11, 2022Updated 4 years ago
- Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data☆646Aug 7, 2026Updated 2 months ago
- Vision-Language Pathology Foundation Model - Nature Medicine☆541Mar 26, 2025Updated last year
- TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification☆495May 3, 2024Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆56Jun 20, 2023Updated 3 years ago