SBU-BMI / wsinferLinks
🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
☆79Updated last year
Alternatives and similar repositories for wsinfer
Users that are interested in wsinfer are comparing it to the libraries listed below
Sorting:
- GrandQC tool for tissue detection and quality control in pathology☆61Updated 5 months ago
- Pipeline for computational pathology☆38Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆58Updated 2 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆36Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆121Updated 8 months ago
- Whole Slide image (WSI) conversion for brightfield histology images☆36Updated 2 weeks ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 7 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆105Updated 9 months ago
- Virtual Alignment of pathoLogy Image Series☆172Updated 2 months ago
- A tool for rapidly labeling objects using deep learning feature embedding☆33Updated this week
- ☆34Updated 5 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆81Updated last year
- Solid Tumor Associative Modeling in Pathology☆84Updated this week
- QuPath extension for Segment Anything Model (SAM)☆117Updated last month
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 6 months ago
- Re-stained whole slide image alignment☆35Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆55Updated last year
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆70Updated 6 months ago
- An open-source digital pathology based rapid image annotation tool☆82Updated last month
- Awesome List of Digital and Computational Pathology Resources☆72Updated 7 months ago
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆151Updated 7 months ago
- This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…☆33Updated 7 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆103Updated this week
- Segment Anything for Histopathology☆43Updated 2 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆93Updated last week
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆30Updated last year
- List of pathology feature extractors and foundation models☆147Updated 2 months ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆83Updated 3 weeks ago