Dana-Farber-AIOS / pathmlLinks
Tools for computational pathology
☆438Updated 3 weeks ago
Alternatives and similar repositories for pathml
Users that are interested in pathml are comparing it to the libraries listed below
Sorting:
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆484Updated this week
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆261Updated last year
- Powerful, open-source AI tools for digital pathology.☆334Updated last week
- HistoQC is an open-source quality control tool for digital pathology slides☆310Updated 2 weeks ago
- Library for Digital Pathology Image Processing☆426Updated this week
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- Stain normalization tools for histological analysis and computational pathology☆160Updated last week
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆176Updated 4 years ago
- Pretrained model for self supervised histopathology☆120Updated 3 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆225Updated 3 weeks ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last week
- PAthological QUpath Obsession - QuPath and Python conversations☆123Updated 2 months ago
- A Python toolkit for pathology image analysis algorithms.☆457Updated this week
- Python Whole Slide Image Preprocessing☆296Updated 3 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆139Updated last year
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆324Updated 3 years ago
- List of pathology feature extractors and foundation models☆157Updated 5 months ago
- Virtual Alignment of pathoLogy Image Series☆189Updated 4 months ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆161Updated last year
- Toolkit for large-scale whole-slide image processing.☆424Updated last week
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆228Updated 2 years ago
- Tools to build deep learning pipelines.☆112Updated last year
- Ressources of histopathology datasets☆489Updated 4 months ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆163Updated last year
- A Python library for deep learning on whole-slide images☆53Updated 4 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆209Updated 6 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆84Updated last year
- QuPath extension for Segment Anything Model (SAM)☆123Updated 3 months ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆596Updated last year
- Deep Learning-based Frozen Section to FFPE Translation☆64Updated last year