MarkZaidi / QuASI
List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
☆25Updated 2 years ago
Alternatives and similar repositories for QuASI:
Users that are interested in QuASI are comparing it to the libraries listed below
- Piecewise alignment for layers of mosaics☆23Updated 3 months ago
- Transfer trained StarDist models across imaging modalities☆3Updated 6 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆51Updated last month
- ☆25Updated 2 months ago
- QuPath extension to interactively align images☆22Updated 3 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆15Updated 3 months ago
- ☆30Updated last year
- QuPath extension for Cellsparse☆18Updated 3 months ago
- multimodal whole slide image registration in a graph structure☆81Updated 8 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 6 months ago
- QuPath extension to run StarDist nucleus detection☆39Updated last month
- The official QuPath extension for InstanSeg☆14Updated last week
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆15Updated last year
- ☆22Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 3 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆23Updated last month
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 4 years ago
- QuPath extension for Segment Anything Model (SAM)☆103Updated last week
- Integrated pipeline for multiplexed image analysis☆84Updated this week
- Whole Slide image (WSI) conversion for brightfield histology images☆35Updated 2 weeks ago
- ☆26Updated last month
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- Development of PICASSO plugin for napari☆14Updated 2 years ago
- StarDist plugin for ImageJ☆28Updated 2 years ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆113Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year