MarkZaidi / QuASILinks
List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
☆27Updated 3 years ago
Alternatives and similar repositories for QuASI
Users that are interested in QuASI are comparing it to the libraries listed below
Sorting:
- multimodal whole slide image registration in a graph structure☆100Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆87Updated this week
- CODEX data processing code☆12Updated 7 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆133Updated 5 months ago
- QuPath extension to interactively align images☆26Updated 6 months ago
- The official QuPath extension for InstanSeg☆29Updated 2 weeks ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆28Updated 2 months ago
- ☆30Updated 3 weeks ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated this week
- QuPath extension to run StarDist nucleus detection☆48Updated 7 months ago
- QuPath extension for Cellsparse☆19Updated 9 months ago
- ☆37Updated 2 years ago
- ☆209Updated this week
- ☆24Updated 2 years ago
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 5 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆32Updated 4 years ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Updated 7 months ago
- version 1 scripts for CODA☆59Updated last year
- Multiple-choice microscopy pipeline☆145Updated 2 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated last week
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated 3 weeks ago
- An introduction to deepcell and deep learning☆156Updated last year
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 9 months ago
- Integrated pipeline for multiplexed image analysis☆102Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- Bio-Formats image file format to raw format converter☆103Updated last month