MarkZaidi / QuASI
List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
☆25Updated 2 years ago
Alternatives and similar repositories for QuASI:
Users that are interested in QuASI are comparing it to the libraries listed below
- Piecewise alignment for layers of mosaics☆24Updated 3 weeks ago
- Transfer trained StarDist models across imaging modalities☆3Updated 7 months ago
- multimodal whole slide image registration in a graph structure☆85Updated 10 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 3 months ago
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- Segment Anything for Histopathology☆27Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 7 months ago
- ☆32Updated last year
- ☆25Updated 3 months ago
- QuPath extension for Cellsparse☆18Updated this week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆68Updated 7 months ago
- Raw format to OME-TIFF converter☆51Updated 2 months ago
- QuPath extension to run StarDist nucleus detection☆39Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- The official QuPath extension for InstanSeg☆16Updated last week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated 3 weeks ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆25Updated last week
- CODEX data processing code☆12Updated last week
- StarDist plugin for ImageJ☆29Updated 2 years ago
- Multiple-choice microscopy pipeline☆131Updated 2 months ago
- Bio-Formats image file format to raw format converter☆90Updated 3 weeks ago
- ☆26Updated 3 months ago
- Integrated pipeline for multiplexed image analysis☆87Updated last month
- ☆23Updated last year
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆18Updated 2 weeks ago
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 4 years ago
- ☆70Updated last month
- QuPath extension for Segment Anything Model (SAM)☆107Updated last month
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 4 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago