jameslz / fastx-utilsLinks
fastx-utils using klib
☆18Updated 4 years ago
Alternatives and similar repositories for fastx-utils
Users that are interested in fastx-utils are comparing it to the libraries listed below
Sorting:
- Long read to rMATS☆31Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- ☆24Updated 11 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆18Updated 3 years ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 2 years ago
- ☆13Updated 2 years ago
- ☆14Updated 7 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- lncRNA-screen☆25Updated 8 years ago
- R package for DNA methylation analysis☆18Updated 10 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Updated last year
- ☆36Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated this week
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Evolutionary Transcriptomics with R☆44Updated last week
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago