fastx-utils using klib
☆20Sep 1, 2020Updated 5 years ago
Alternatives and similar repositories for fastx-utils
Users that are interested in fastx-utils are comparing it to the libraries listed below
Sorting:
- Demultiplexes a fastq.☆48Dec 21, 2020Updated 5 years ago
- Chimera: A Versatile Metagenomic Classification Tool☆20Feb 1, 2026Updated last month
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- An RNA virus strain-level identification tool for short reads.☆23Jan 29, 2026Updated last month
- ☆25Apr 29, 2018Updated 7 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 4 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆10Sep 3, 2025Updated 6 months ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Feb 19, 2026Updated last week
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 5 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 7 months ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 6 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- ☆15Jun 2, 2021Updated 4 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- ☆12Dec 7, 2020Updated 5 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 8 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- ☆12Feb 19, 2021Updated 5 years ago