jameslz / fastx-utils
fastx-utils using klib
☆18Updated 4 years ago
Alternatives and similar repositories for fastx-utils:
Users that are interested in fastx-utils are comparing it to the libraries listed below
- ☆14Updated 7 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- ☆23Updated 3 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Computes various SV statistics☆14Updated last year
- Long read to rMATS☆31Updated 2 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 2 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- ☆24Updated 8 months ago
- ☆18Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 10 months ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- allele specific DNA methylation haplotype region☆14Updated last year
- ☆14Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- ☆35Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 4 years ago
- ☆22Updated 4 months ago
- ☆19Updated 3 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago