fastx-utils using klib
☆20Sep 1, 2020Updated 5 years ago
Alternatives and similar repositories for fastx-utils
Users that are interested in fastx-utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Demultiplexes a fastq.☆48Dec 21, 2020Updated 5 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 7 months ago
- ☆25Apr 29, 2018Updated 7 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated last month
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Jan 21, 2021Updated 5 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 8 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago
- ☆11Aug 3, 2018Updated 7 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated 11 months ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Feb 27, 2026Updated 3 weeks ago
- functions and algorithms for single cell RNA-seq analyses☆12Jan 26, 2021Updated 5 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- An RNA virus strain-level identification tool for short reads.☆23Updated this week
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 3 years ago
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- UCSC Genome Browser Docker Image☆17May 12, 2022Updated 3 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated last year
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- GENome Organisation Visual Analytics☆15Dec 24, 2021Updated 4 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 6 years ago
- ☆17Mar 17, 2026Updated last week
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Dec 22, 2023Updated 2 years ago
- Unofficial repo for software vendoring or packaging purposes☆22Oct 23, 2017Updated 8 years ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago