jameslz / fastx-utilsLinks
fastx-utils using klib
☆20Updated 5 years ago
Alternatives and similar repositories for fastx-utils
Users that are interested in fastx-utils are comparing it to the libraries listed below
Sorting:
- Long read to rMATS☆32Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- ☆39Updated 4 years ago
- ☆26Updated last year
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- ☆14Updated 7 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- R package for DNA methylation analysis☆20Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- ☆20Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- ☆38Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- ☆15Updated 7 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- Computes various SV statistics☆14Updated 2 years ago
- ☆51Updated 6 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- ☆18Updated 4 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated last month
- ☆23Updated 4 years ago