jameslz / fastx-utilsLinks
fastx-utils using klib
☆20Updated 5 years ago
Alternatives and similar repositories for fastx-utils
Users that are interested in fastx-utils are comparing it to the libraries listed below
Sorting:
- Long read to rMATS☆32Updated 2 years ago
- ☆26Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ☆14Updated 7 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆15Updated 7 years ago
- ☆20Updated 3 years ago
- Evolutionary Transcriptomics with R☆49Updated last week
- Plant small RNA target prediction tool☆26Updated 8 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- R package for DNA methylation analysis☆19Updated last year
- ☆23Updated 11 months ago
- ☆18Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- ☆38Updated 4 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- processing 10x genomics reads☆26Updated 6 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 5 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆51Updated 6 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆28Updated 6 years ago
- ☆38Updated 2 years ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago