refgenie / refgenieserver
Serves a web interface and RESTful API for reference genome assets.
☆12Updated 3 years ago
Alternatives and similar repositories for refgenieserver:
Users that are interested in refgenieserver are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- (WIP) best-practices workflow for rare disease☆60Updated 7 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 9 months ago
- R package for Methylation-based Inference of Regulatory Activity☆11Updated 4 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- ☆17Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆23Updated this week
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated last month
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated 3 weeks ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 4 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last week
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Reference genome resource manager☆74Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆31Updated last week
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago