Alternatives and similar repositories for refgenieserver

Users that are interested in refgenieserver are comparing it to the libraries listed below

• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last month
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆62Updated 9 months ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆71Updated last week
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆35Updated 5 years ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆74Updated last week
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Updated 4 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated 2 weeks ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆36Updated 3 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆57Updated last week
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 3 years ago
• Novartis / pisces
  PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …
  ☆30Updated 7 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• s-andrews / SeqMonk
  SeqMonk NGS visualisation and analysis tool
  ☆51Updated 2 months ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆65Updated 3 weeks ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆52Updated 6 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆62Updated last year
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆67Updated 5 years ago
• gagneurlab / absplice
  ☆39Updated 7 months ago
• mskcc / ngs-filters
  Filters for false-positive mutation calls in NGS
  ☆34Updated 6 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆63Updated 8 months ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 6 years ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated 2 months ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆46Updated 10 months ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆45Updated 2 months ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆53Updated 4 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆36Updated last week
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• IARCbioinfo / VCF-tricks
  Tip and tricks for VCF files
  ☆21Updated 7 years ago