refgenie / refgenieserver
Serves a web interface and RESTful API for reference genome assets.
☆13Updated 2 years ago
Related projects: ⓘ
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Python module and utility programs for working with GFF files☆30Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆44Updated this week
- The Zavolab Automated RNA-seq Pipeline☆33Updated 3 weeks ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆40Updated 4 months ago
- (WIP) best-practices workflow for rare disease☆58Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆40Updated 2 years ago
- Reference genome resource manager☆74Updated 9 months ago
- ☆33Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆33Updated 2 months ago
- Mapped QC analysis program☆41Updated 6 years ago
- Versatile FASTA/FASTQ demultiplexer.☆31Updated 3 months ago
- Master of Pores 2☆22Updated 10 months ago
- Analysis from kallisto paper☆32Updated 8 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆26Updated this week
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- ☆14Updated 2 years ago
- cgat-apps repository☆33Updated 3 weeks ago
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆25Updated 6 years ago
- ☆16Updated 3 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆67Updated 6 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- Gene Fusion Visualiser☆51Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆25Updated this week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated last month