Alternatives and similar repositories for PBSIM-PacBio-Simulator

Users that are interested in PBSIM-PacBio-Simulator are comparing it to the libraries listed below

• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆55Updated last year
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆80Updated last week
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆80Updated 3 weeks ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 2 months ago
• mcfrith / tandem-genotypes
  ☆48Updated 10 months ago
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 4 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆72Updated last year
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 6 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year
• univieCUBE / gepard
  Genome Pair Rapid Dotter
  ☆65Updated 3 years ago
• MeHelmy / princess
  ☆79Updated 2 months ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 11 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆7Updated 3 months ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• kjenike / panagram
  ☆61Updated 2 months ago
• LooseLab / bulkvis
  ☆48Updated 6 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago