This is an updated mirror of the original PacBio Read Simulator
☆39Mar 30, 2018Updated 7 years ago
Alternatives and similar repositories for PBSIM-PacBio-Simulator
Users that are interested in PBSIM-PacBio-Simulator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆21Apr 27, 2025Updated 10 months ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Jul 22, 2023Updated 2 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Jun 27, 2022Updated 3 years ago
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 2 years ago
- ☆13Nov 29, 2022Updated 3 years ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated last year
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 7 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆52May 16, 2022Updated 3 years ago
- A viral haplotype reconstruction tool for long reads.☆13Mar 2, 2024Updated 2 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Naive de Bruijn graph implementation in python☆37Oct 2, 2017Updated 8 years ago
- a long read simulator that can imitate many types of read problems☆273Jul 22, 2024Updated last year
- A tool for Racon polishing of miniasm assemblies☆80Mar 2, 2026Updated 3 weeks ago
- ☆36Apr 13, 2024Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Nanopore sequence read simulator☆294Mar 12, 2026Updated last week