pfaucon / PBSIM-PacBio-SimulatorLinks
This is an updated mirror of the original PacBio Read Simulator
☆39Updated 7 years ago
Alternatives and similar repositories for PBSIM-PacBio-Simulator
Users that are interested in PBSIM-PacBio-Simulator are comparing it to the libraries listed below
Sorting:
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- ☆46Updated 5 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- ☆67Updated last year
- Genome Pair Rapid Dotter☆67Updated 4 years ago
- Banded Striped DNA Sequence Alignment☆50Updated 2 years ago
- ☆78Updated 5 years ago
- ☆68Updated last week
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated last week
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- ☆119Updated 3 months ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆93Updated 2 weeks ago
- Python client library for Guppy☆32Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆72Updated 6 years ago
- TGS scaffolding☆47Updated 4 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆65Updated 11 months ago