Alternatives and similar repositories for DIFFUSE

Users that are interested in DIFFUSE are comparing it to the libraries listed below

• KarchinLab / HotMAPS_2016
  Detects hotspot regions for somatic mutations in 3D protein structures
  ☆2Updated last year
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• cyang235 / LncADeep
  LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning
  ☆27Updated 6 years ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆14Updated 7 months ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated last year
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆22Updated 6 years ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆12Updated 2 weeks ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆20Updated last year
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• crazyhottommy / Machine_learning_drug_discovery
  ☆27Updated last month
• goodarzilab / SwitchFinder
  ☆17Updated 10 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 3 months ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆12Updated this week
• epigen / KPNN
  Knowledge-primed neural networks
  ☆36Updated 2 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• mhorlacher / rbpnet
  ☆18Updated last year
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆20Updated 2 years ago
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 4 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆11Updated last month
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆10Updated 5 years ago
• erinhwilson / promoter-id-from-rnaseq
  Computational framework to identify promoter sequences from RNA-seq datasets
  ☆10Updated last year
• JieZheng-ShanghaiTech / HiCoEx
  A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
  ☆11Updated 2 years ago
• bhklab / PGx_Guidelines
  ☆10Updated 3 years ago