chenhcs / DIFFUSELinks
Deep learning based prediction of IsoForm FUnctions from Sequences and Expression
☆15Updated 3 years ago
Alternatives and similar repositories for DIFFUSE
Users that are interested in DIFFUSE are comparing it to the libraries listed below
Sorting:
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 7 years ago
- ☆18Updated 11 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- BPNet manuscript code.☆12Updated 4 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆16Updated 8 months ago
- Kdrew's scripts for handling protein complex map data☆14Updated 2 weeks ago
- PRedictor of IMmunogenic Epitopes☆22Updated last month
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- DIABLO - an integrative multi-group, multi-dataset classification method☆23Updated 6 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- A collection of useful functions for bioinformatics data analysis☆23Updated 3 weeks ago
- Scripts for building computational models of gene regulation with tensorflow☆10Updated 5 years ago
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Updated last year
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆17Updated last year
- R tool to analyse and integrate multiple -omics data☆12Updated 3 weeks ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆13Updated last year
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 2 years ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆17Updated 2 months ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆11Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago