BioinformaticsToolsmith / MeShClust2Links
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
☆14Updated 3 years ago
Alternatives and similar repositories for MeShClust2
Users that are interested in MeShClust2 are comparing it to the libraries listed below
Sorting:
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 2 months ago
- Python bindings for the TaxonKit library☆41Updated 2 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last week
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 5 months ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Updated 2 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆19Updated 6 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated this week
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 2 years ago
- ☆15Updated 5 years ago
- ORF prediction using python☆11Updated 4 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16Updated last year
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Protein Sequence Annotation with Language Models☆23Updated 3 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 4 months ago
- Influenza genome analysis Nextflow workflow☆28Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆73Updated 2 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last week
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 5 years ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆71Updated 2 months ago
- Realtime base modification frequency tool☆11Updated 4 months ago
- ☆13Updated 10 months ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆14Updated 11 months ago
- ☆31Updated 3 years ago
- Metagenome analysis using the Kraken software suite☆33Updated 2 years ago