BioinformaticsToolsmith / MeShClust2Links
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
☆14Updated 3 years ago
Alternatives and similar repositories for MeShClust2
Users that are interested in MeShClust2 are comparing it to the libraries listed below
Sorting:
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 8 months ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- rnalib: a python-based transcriptomics library☆11Updated 5 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated last month
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last month
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 3 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.☆22Updated last year
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Updated 2 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Updated 3 months ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆15Updated 4 years ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Updated 3 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆28Updated this week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Plot multiple sequence alignment (MSA)☆15Updated last year
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- ☆18Updated last year
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16Updated last year
- Simple Python program to perform codon optimization or heterology calculations.☆11Updated 4 years ago
- ☆16Updated last month