A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data
☆14Oct 12, 2023Updated 3 years ago
Alternatives and similar repositories for GEM3D_toolkit
Users that are interested in GEM3D_toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 3 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- ☆14Nov 29, 2022Updated 3 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆23Apr 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆20Aug 1, 2023Updated 3 years ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 3 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Feb 22, 2023Updated 3 years ago
- ☆11Aug 27, 2023Updated 3 years ago
- How to fill gaps in genome of soybean☆12May 24, 2023Updated 3 years ago
- ☆78Jun 12, 2020Updated 6 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Dec 8, 2020Updated 5 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆39Jul 5, 2025Updated last year
- Python binding for KCP☆28Mar 27, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- ☆19Mar 8, 2023Updated 3 years ago
- Single-cell Iso Prep☆16Oct 28, 2023Updated 3 years ago
- Legacy, see cancerit/PCAP-core: NGS reference implementations and helper code for the IGCG/TCGA Pan-Cancer Analysis Project☆14Jun 12, 2024Updated 2 years ago
- ☆14Aug 9, 2016Updated 10 years ago
- A simple tool to monitor a process group and record its CPU, MEM and time cost.☆19Mar 21, 2023Updated 3 years ago
- 🧬📈 Turn DNA sequences into interactive visualizations☆13Jan 20, 2023Updated 3 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- This is an updated mirror of the original PacBio Read Simulator☆40Mar 30, 2018Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- DirectX 11 game demo☆11Aug 19, 2017Updated 9 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- ☆15Jun 4, 2023Updated 3 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- Label-free measurement of density and anisotropy from polarization-resolved images☆13Jun 4, 2023Updated 3 years ago
- ☆11Jan 22, 2018Updated 8 years ago
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆10Mar 15, 2024Updated 2 years ago
- Brick breaker clone in C++ from the Planet Chili Beginner C++ tutorial series.☆11Aug 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BWT-SW - A Practical Local Alignment Tool that Finds All Alignments☆12Feb 4, 2011Updated 15 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- Code for "High-throughput and high-sensitivity full-length single-cell RNA-seq analysis on third-generation sequencing platform" paper. P…☆10Jun 21, 2024Updated 2 years ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- An R package to visualize bigwigs.☆31Jul 5, 2022Updated 4 years ago
- A collection of tools for Genome Assembly analysis☆24May 29, 2024Updated 2 years ago
- ☆21Nov 15, 2020Updated 5 years ago