GraphProt: modelling binding preferences of RNA-binding proteins
☆21Jul 19, 2018Updated 8 years ago
Alternatives and similar repositories for GraphProt
Users that are interested in GraphProt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modelling RBP binding preferences to predict RPB binding sites☆11Mar 4, 2021Updated 5 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated 2 years ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Aug 11, 2023Updated 2 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dockerfiles to build Galaxy images☆24Aug 22, 2023Updated 2 years ago
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆16Jun 16, 2026Updated last month
- ☆29Nov 6, 2022Updated 3 years ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Aug 7, 2020Updated 5 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 4 months ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- ☆11Mar 29, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Validate FastQ Files☆36Oct 30, 2018Updated 7 years ago
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated last year
- JAMM Peak Finder for Sequencing Datasets☆30Mar 12, 2020Updated 6 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- 基于YoloV3和行人重识别模型的特定行人检索☆12May 25, 2022Updated 4 years ago
- The ViennaRNA Package☆419Feb 24, 2026Updated 4 months ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Jan 27, 2022Updated 4 years ago
- ☆20Jul 20, 2015Updated 11 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆22Apr 27, 2025Updated last year
- Golang VNC screenshot utility☆13Feb 19, 2018Updated 8 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆11Jan 20, 2022Updated 4 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Galaxy RNA workbench☆41Oct 10, 2020Updated 5 years ago
- Sample and predict coarse grain 3D RNA structures☆10Feb 12, 2024Updated 2 years ago
- Pipeline for Ribosome Profiling Data☆19Jul 5, 2023Updated 3 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year