biovcnet / topic-functional-annotationLinks
A repository for the lessons and notebooks used for Binder tutorials
☆15Updated 5 years ago
Alternatives and similar repositories for topic-functional-annotation
Users that are interested in topic-functional-annotation are comparing it to the libraries listed below
Sorting:
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- Pangenome analysis of eukaryotes.☆21Updated 5 years ago
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- ☆35Updated 5 years ago
- ☆53Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- metag-rev-sup☆22Updated 8 years ago
- ☆27Updated 11 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Updated 7 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last year
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Gene-flank analysis tool☆37Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago