biovcnet / topic-functional-annotation
A repository for the lessons and notebooks used for Binder tutorials
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for topic-functional-annotation
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Genome-Genome circle synteny☆23Updated 11 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- genomic alignment similarity search tool☆19Updated 5 months ago
- ☆21Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- ☆43Updated 7 months ago
- Gene-flank analysis tool☆26Updated 6 months ago
- ☆26Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- ☆32Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆25Updated this week
- An R package to infer and analyze synteny networks from protein sequences☆21Updated last month
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- A snakemake workflow for metagenomic projects☆14Updated last year