gwct / refereeLinks
Reference genome quality scores
☆21Updated 4 years ago
Alternatives and similar repositories for referee
Users that are interested in referee are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 2 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated last week
- A comparative genome scaffolding tool☆16Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Find Unique genomic Regions☆32Updated last month
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- ☆28Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- transposable element typing pipeline☆19Updated last year
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Implementation of ToL genome assembly workflows☆24Updated this week
- Transfer coordinates across genomes☆23Updated 6 months ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- ☆20Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Reference bias measuring toolkit☆19Updated 7 months ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- Just Annotate My Genome☆19Updated last year