lh3 / etrfLinks
Exact Tandem Repeat Finder (not a TRF replacement)
☆49Updated 5 years ago
Alternatives and similar repositories for etrf
Users that are interested in etrf are comparing it to the libraries listed below
Sorting:
- Structural variant caller☆54Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆35Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- ☆81Updated 5 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Variant annotation and merging pipeline☆39Updated 2 weeks ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- ☆31Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆21Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆44Updated 2 weeks ago
- ☆48Updated last year
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Long-read splice alignment with high accuracy☆64Updated 10 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆31Updated 11 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago