nolanlab / vortexLinks
VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
☆34Updated 2 years ago
Alternatives and similar repositories for vortex
Users that are interested in vortex are comparing it to the libraries listed below
Sorting:
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- ☆29Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆20Updated 8 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 9 months ago
- ☆69Updated 7 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- post-clustering differential expression test☆36Updated 6 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- consistent quantification of external RNA-seq data sets☆58Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- ☆12Updated last year
- easy access to benchmark datasets☆50Updated 7 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆26Updated 7 years ago
- ☆48Updated 7 years ago