☆294Jul 15, 2022Updated 4 years ago
Alternatives and similar repositories for monocle-release
Users that are interested in monocle-release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆469Sep 22, 2026Updated last month
- R toolkit for single cell genomics☆2,812Oct 28, 2026Updated last week
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆348Jul 28, 2020Updated 6 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools and methods for analysis of single cell assay data in R☆266Oct 17, 2025Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆674Oct 15, 2026Updated 3 weeks ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆260Jun 28, 2026Updated 4 months ago
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Community-provided extensions to Seurat☆372Oct 8, 2026Updated 3 weeks ago
- URD - Reconstruction of Branching Developmental Trajectories☆128Jun 29, 2021Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cells☆685Updated this week
- chromatin Variability Across Regions (of the genome!)☆198May 1, 2026Updated 6 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆272Jan 10, 2026Updated 9 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,889Updated this week
- ☆62Mar 18, 2026Updated 7 months ago
- RNA velocity estimation in Python☆177Oct 7, 2025Updated last year
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆648Jun 26, 2025Updated last year
- RNA Velocity generalized through dynamical modeling☆515Feb 25, 2026Updated 8 months ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- RNA velocity estimation in R☆195Sep 14, 2023Updated 3 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,609Updated this week
- Analysis of single cell RNA-seq data course☆686Apr 11, 2022Updated 4 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆469Feb 18, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- ☆70May 2, 2018Updated 8 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆387Oct 3, 2024Updated 2 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 9 years ago
- AUCell: score single cells with gene regulatory networks☆208Mar 9, 2024Updated 2 years ago
- Fast Wilcoxon and auROC☆220Sep 20, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago