☆295Jul 15, 2022Updated 3 years ago
Alternatives and similar repositories for monocle-release
Users that are interested in monocle-release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆459May 26, 2026Updated last month
- R toolkit for single cell genomics☆2,762Jun 26, 2026Updated last week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆342Jul 28, 2020Updated 5 years ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆489Apr 5, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 8 months ago
- ☆364Dec 9, 2021Updated 4 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆665Jun 5, 2026Updated last month
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆256Jun 28, 2026Updated last week
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- RNA velocity estimation in R☆195Sep 14, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package for detecting doublets in single-cell RNA sequencing data☆553Mar 21, 2025Updated last year
- AUCell: score single cells with gene regulatory networks☆196Mar 9, 2024Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆340Apr 23, 2024Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆676Nov 14, 2025Updated 7 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,771Jun 23, 2026Updated 2 weeks ago
- URD - Reconstruction of Branching Developmental Trajectories☆128Jun 29, 2021Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cells☆662Jun 1, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆792Jan 6, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆458Feb 18, 2025Updated last year
- Analysis of single cell RNA-seq data course☆682Apr 11, 2022Updated 4 years ago
- RNA velocity estimation in Python☆175Oct 7, 2025Updated 9 months ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆617Jun 26, 2025Updated last year
- ☆59Mar 18, 2026Updated 3 months ago
- Community-provided extensions to Seurat☆366Jun 29, 2026Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆311Mar 6, 2023Updated 3 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,501Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆384Oct 3, 2024Updated last year
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆183Dec 18, 2021Updated 4 years ago
- RNA Velocity generalized through dynamical modeling☆506Feb 25, 2026Updated 4 months ago
- chromatin Variability Across Regions (of the genome!)☆191May 1, 2026Updated 2 months ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆48May 13, 2016Updated 10 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 5 months ago
- PHATE dimensionality reduction method implemented in R☆84Feb 11, 2021Updated 5 years ago