TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
☆136Nov 28, 2023Updated 2 years ago
Alternatives and similar repositories for tracer
Users that are interested in tracer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 9 months ago
- Analysis of immune repertoire sequencing results☆144Updated this week
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- Matching T-cell receptor repertoires to a database of antigen specificities☆39Jul 14, 2026Updated last week
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 10 months ago
- Git-based antigen specificity database storage & management.☆155Jun 11, 2026Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆396Jul 10, 2026Updated last week
- flexible CDR based distance metrics☆74Dec 16, 2025Updated 7 months ago
- A toolkit for single-cell immune profiling☆372Jul 9, 2026Updated last week
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated last month
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆77Feb 27, 2023Updated 3 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Apr 7, 2016Updated 10 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆17Jun 24, 2021Updated 5 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆263Updated this week
- Normalize CITEseq Data☆71Nov 9, 2025Updated 8 months ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆111Dec 16, 2022Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆242Feb 12, 2026Updated 5 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆677Nov 14, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆70May 2, 2018Updated 8 years ago
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 6 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 10 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆67Nov 18, 2025Updated 8 months ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆110Jul 3, 2023Updated 3 years ago
- ☆58Nov 1, 2024Updated last year
- ☆364Dec 9, 2021Updated 4 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago