TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
☆136Nov 28, 2023Updated 2 years ago
Alternatives and similar repositories for tracer
Users that are interested in tracer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 5 months ago
- [Deprecated, see README] Post-analysis of immune repertoire sequencing data☆144Mar 26, 2026Updated 2 weeks ago
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 6 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆118Apr 26, 2025Updated 11 months ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆385Apr 3, 2026Updated last week
- 🗂️ Git-based TCR database storage & management. Submissions welcome!☆153Mar 27, 2026Updated 2 weeks ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 3 months ago
- A toolkit for single-cell immune profiling☆366Apr 3, 2026Updated last week
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated 2 months ago
- ☆17Jun 24, 2021Updated 4 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Apr 7, 2016Updated 10 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Feb 27, 2023Updated 3 years ago
- Normalize CITEseq Data☆70Nov 9, 2025Updated 5 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- Detecting TCR involved in immune responses from single RepSeq datasets☆27Jun 17, 2019Updated 6 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆238Feb 12, 2026Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆125Mar 16, 2026Updated 3 weeks ago
- Inferring CNV from Single-Cell RNA-Seq☆662Nov 14, 2025Updated 4 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ☆69May 2, 2018Updated 7 years ago
- A Bayesian model for compositional single-cell data analysis☆194Jan 13, 2026Updated 2 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆65Nov 18, 2025Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 2 years ago
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- ☆56Nov 1, 2024Updated last year
- ☆361Dec 9, 2021Updated 4 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆538Mar 21, 2025Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆334Jul 28, 2020Updated 5 years ago