Wishbone is an algorithm to align cells along developmental trajectories with branches
☆42Feb 8, 2020Updated 6 years ago
Alternatives and similar repositories for wishbone
Users that are interested in wishbone are comparing it to the libraries listed below
Sorting:
- ☆12Jul 30, 2022Updated 3 years ago
- ☆69May 2, 2018Updated 7 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Subpopulation detection in high-dimensional single-cell data☆141Oct 22, 2020Updated 5 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Apr 14, 2019Updated 6 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- An algorithm for mapping cell state transitions.☆29Mar 3, 2023Updated 2 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 5 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆19May 14, 2020Updated 5 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆150Jan 20, 2023Updated 3 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 2 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆179Dec 18, 2021Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- Feature selection for preserving biological trajectories in single-cell data☆20May 29, 2025Updated 9 months ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 7 months ago
- ☆10Jan 20, 2023Updated 3 years ago
- Store collections of experimental data based on TileDB☆12Feb 23, 2026Updated last week
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Mar 3, 2017Updated 8 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- ☆14Nov 29, 2025Updated 3 months ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- ☆12Apr 24, 2020Updated 5 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- Pipeline for processing inDrops sequencing data☆76Oct 26, 2018Updated 7 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 2 years ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Jan 31, 2024Updated 2 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Oct 27, 2020Updated 5 years ago