ManuSetty / wishboneLinks
Wishbone is an algorithm to align cells along developmental trajectories with branches
☆42Updated 5 years ago
Alternatives and similar repositories for wishbone
Users that are interested in wishbone are comparing it to the libraries listed below
Sorting:
- easy access to benchmark datasets☆50Updated 7 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- ☆55Updated 11 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆109Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Normalization for single cell RNA-seq data☆50Updated 7 months ago
- consistent quantification of external RNA-seq data sets☆58Updated 2 years ago
- ☆29Updated 3 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- Biclustering algorithm☆58Updated 8 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Updated 2 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆60Updated 3 years ago
- ☆69Updated 7 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 7 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Updated 7 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆85Updated 4 months ago
- Single-cell Hierarchical Poisson Factorization☆74Updated 3 years ago
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago
- ☆28Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago