sjspielman / pyvolveLinks
Python library to simulate evolutionary sequence data
☆80Updated 4 years ago
Alternatives and similar repositories for pyvolve
Users that are interested in pyvolve are comparing it to the libraries listed below
Sorting:
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆114Updated 2 weeks ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- compositional data analysis toolbox☆60Updated 3 years ago
- A console-based alignment viewer☆117Updated 6 months ago
- PASTA (Practical Alignment using SATe and Transitivity)☆95Updated 7 months ago
- Efficient phylogenetic clustering of viral sequences☆90Updated last month
- Fishers Exact Test for Python (Cython)☆66Updated 9 months ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆94Updated last month
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆228Updated 3 weeks ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- ☆67Updated 9 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 9 months ago
- The Biological Observation Matrix (BIOM) Format Project☆95Updated 2 weeks ago
- An imagemagick-like frontend to Biopython SeqIO☆117Updated last year
- Visualization of the pan-genome output by panX☆65Updated 6 months ago
- SEER, reimplemented in python 🐍🔮☆127Updated 7 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Python bindings for the TaxonKit library☆41Updated last month
- Automated taxonomy decoration onto a tree☆16Updated 2 years ago
- Phylogenetic tree viewer based on D3.js☆61Updated last year
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆63Updated 5 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- exploratory and interactive microbiome analyses based on heatmaps☆27Updated 11 months ago
- CoGe (Comparative Genomics) Platform☆46Updated 4 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- MEGAN Community Edition☆72Updated last year
- PaperBLAST: find papers about a protein or its homologs☆50Updated 3 weeks ago