Python library to simulate evolutionary sequence data
☆80Dec 16, 2021Updated 4 years ago
Alternatives and similar repositories for pyvolve
Users that are interested in pyvolve are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆233Jan 8, 2026Updated 2 months ago
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆10Sep 5, 2024Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.☆28Oct 9, 2024Updated last year
- ☆11Mar 12, 2026Updated last week
- Sequence simulator☆55Feb 3, 2025Updated last year
- ☆11Nov 21, 2025Updated 4 months ago
- Simulate ARGs and genomic sequence data using population genetic models☆210Mar 6, 2026Updated 2 weeks ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 4 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- Evolution simulator with extinct lineages☆25Apr 3, 2025Updated 11 months ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated last year
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- NGSphy: phylogenomic simulation of next-generation sequencing data☆14Mar 9, 2018Updated 8 years ago
- software for UCE (and general) phylogenomics☆88Feb 27, 2026Updated 3 weeks ago
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- Conversations about teaching computational skills to undergraduates☆12Sep 22, 2021Updated 4 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- phylogenetic analyses informed by deep mutational scanning data☆15Jun 12, 2024Updated last year
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆213Updated this week
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 9 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Nov 21, 2025Updated 4 months ago
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆457Mar 18, 2026Updated last week
- A grammar of graphics for comparative genomics☆750Feb 23, 2026Updated last month
- Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:☆152Mar 10, 2026Updated 2 weeks ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last month
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- ☆11May 10, 2025Updated 10 months ago
- R We There Yet?☆32Mar 27, 2025Updated 11 months ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 2 months ago