Alternatives and similar repositories for pyvolve:

Users that are interested in pyvolve are comparing it to the libraries listed below

• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆115Updated last year
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆101Updated 2 weeks ago
• rajanil / fastStructure
  A variational framework for inferring population structure from SNP genotype data.
  ☆136Updated 2 years ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆66Updated last year
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆89Updated 5 months ago
• molbio-dresden / flexidot
  Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  ☆91Updated 2 months ago
• AADavin / Zombi
  Evolution simulator with extinct lineages
  ☆25Updated last month
• biocore / gneiss
  compositional data analysis toolbox
  ☆59Updated 2 years ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆34Updated 2 years ago
• katholt / plotTree
  ☆67Updated 8 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆25Updated 2 years ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆47Updated last week
• kr-colab / locator
  deep learning prediction of geographic location from individual genome sequences
  ☆50Updated 3 months ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆92Updated this week
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆82Updated last year
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆50Updated 4 years ago
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆121Updated 6 months ago
• marekborowiec / AMAS
  Calculate summary statistics and manipulate multiple sequence alignments
  ☆81Updated last year
• benjaminhgood / LTEE-metagenomic
  Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
  ☆23Updated 6 years ago
• biocore / biom-format
  The Biological Observation Matrix (BIOM) Format Project
  ☆94Updated 5 months ago
• ssolo / ALE
  Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…
  ☆47Updated 2 months ago
• brettc / partitionfinder
  PartitionFinder discovers optimal partitioning schemes for DNA sequences.
  ☆67Updated 4 years ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆46Updated 7 years ago
• chrisquince / DESMAN
  De novo Extraction of Strains from MetAgeNomes
  ☆68Updated 4 years ago
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆122Updated last year
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆47Updated 3 years ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆32Updated last week
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆59Updated 4 years ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆47Updated 3 years ago