sjspielman / pyvolveLinks
Python library to simulate evolutionary sequence data
☆80Updated 3 years ago
Alternatives and similar repositories for pyvolve
Users that are interested in pyvolve are comparing it to the libraries listed below
Sorting:
- Tutorial on Bayesian phylogenetic analysis☆48Updated 8 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last week
- ☆67Updated 9 years ago
- compositional data analysis toolbox☆60Updated 2 years ago
- Efficient phylogenetic clustering of viral sequences☆89Updated 2 weeks ago
- Fishers Exact Test for Python (Cython)☆66Updated 7 months ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆223Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Automated taxonomy decoration onto a tree☆15Updated 2 years ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆93Updated last week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last week
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆47Updated last month
- A console-based alignment viewer☆116Updated 5 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆95Updated 5 months ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Updated last year
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆22Updated 6 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- PASTA (Practical Alignment using SATe and Transitivity)☆94Updated 5 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- MEGAN Community Edition☆72Updated last year
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆56Updated 3 weeks ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆67Updated 3 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆59Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago