Python library to simulate evolutionary sequence data
☆80Dec 16, 2021Updated 4 years ago
Alternatives and similar repositories for pyvolve
Users that are interested in pyvolve are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆234Apr 25, 2026Updated last week
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 3 months ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.☆28Oct 9, 2024Updated last year
- ☆11Mar 12, 2026Updated last month
- Sequence simulator☆55Feb 3, 2025Updated last year
- ☆11Nov 21, 2025Updated 5 months ago
- Simulate ARGs and genomic sequence data using population genetic models☆212Apr 15, 2026Updated 2 weeks ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 4 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- Evolution simulator with extinct lineages☆25Apr 3, 2025Updated last year
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- NGSphy: phylogenomic simulation of next-generation sequencing data☆14Mar 9, 2018Updated 8 years ago
- software for UCE (and general) phylogenomics☆88Feb 27, 2026Updated 2 months ago
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- Conversations about teaching computational skills to undergraduates☆12Sep 22, 2021Updated 4 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 3 weeks ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 9 years ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆217Apr 22, 2026Updated last week
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated this week
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆463Apr 27, 2026Updated last week
- A grammar of graphics for comparative genomics☆762Feb 23, 2026Updated 2 months ago
- Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:☆156Mar 10, 2026Updated last month
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 2 months ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- ☆11May 10, 2025Updated 11 months ago
- R We There Yet?☆32Mar 27, 2025Updated last year