sjspielman / pyvolveLinks
Python library to simulate evolutionary sequence data
☆80Updated 4 years ago
Alternatives and similar repositories for pyvolve
Users that are interested in pyvolve are comparing it to the libraries listed below
Sorting:
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆114Updated last week
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- compositional data analysis toolbox☆60Updated 3 years ago
- Efficient phylogenetic clustering of viral sequences☆89Updated 3 weeks ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆94Updated last month
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 6 months ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- http://www.combio.pl/alfree☆23Updated 3 years ago
- ☆67Updated 9 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Visualization of the pan-genome output by panX☆65Updated 6 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A console-based alignment viewer☆117Updated 6 months ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆225Updated last week
- SEER, reimplemented in python 🐍🔮☆125Updated 6 months ago
- Snakemake workflow management system and CLI generation tool☆63Updated last month
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆62Updated 5 years ago
- The Biological Observation Matrix (BIOM) Format Project☆95Updated last month
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆57Updated last month
- locally query the ncbi taxonomy☆39Updated 3 years ago
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- Evolution simulator with extinct lineages☆25Updated 8 months ago
- Python3 scripts to manipulate FASTA and FASTQ files☆72Updated 8 months ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Updated 7 years ago