technion-cs-nlp / BiologicalTokenizersLinks
Effect of tokenization on transformers for biological sequence
☆18Updated last year
Alternatives and similar repositories for BiologicalTokenizers
Users that are interested in BiologicalTokenizers are comparing it to the libraries listed below
Sorting:
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Updated 2 years ago
- ☆16Updated this week
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆29Updated 3 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆27Updated 2 years ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆18Updated 3 weeks ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆23Updated last month
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Updated 8 months ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- ☆42Updated 11 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Updated 2 years ago
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆13Updated 3 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆17Updated 3 years ago
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated 9 months ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆16Updated 2 years ago
- Jax code for functional genomics ML☆14Updated 4 months ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆40Updated last month
- ☆10Updated 3 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆28Updated 2 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- Python package to query and analyse UniProt☆25Updated 4 years ago
- Genomic sequence preprocessing toolkit☆12Updated 3 weeks ago
- https://www.biorxiv.org/content/10.1101/2024.11.12.623182v2☆20Updated this week
- GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…☆9Updated 2 years ago
- This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.☆25Updated 2 years ago
- Prediction of virus-host association using protein language models and multiple instance learning☆17Updated last year
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆36Updated 10 months ago
- Interpretable splicing model☆20Updated 2 years ago