Alternatives and similar repositories for BiologicalTokenizers

Users that are interested in BiologicalTokenizers are comparing it to the libraries listed below

• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆12Updated 2 years ago
• songlab-cal / mogwai
  ☆25Updated 3 years ago
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated 7 months ago
• TattaBio / OMG
  ☆34Updated 8 months ago
• alrojo / UniLanguage
  Homology reduced UniProt, train-/valid-/testsets for language modeling
  ☆16Updated 3 years ago
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆20Updated 5 months ago
• QData / FastSK
  Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…
  ☆21Updated 2 years ago
• regev-lab / interpretable-splicing-model
  Interpretable splicing model
  ☆20Updated last year
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 4 years ago
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆15Updated last year
• Llannelongue / B4PPI
  Benchmarking Pipeline for Prediction of Protein-Protein Interactions
  ☆12Updated 3 years ago
• starstorms9 / geco
  GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…
  ☆9Updated last year
• nstrodt / USMPep
  Major Histocompatibility Complex (MHC) Binding Affinity Prediction
  ☆10Updated 4 years ago
• mims-harvard / PDGrapher
  Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
  ☆24Updated this week
• ihh / bilby
  Jax code for functional genomics ML
  ☆13Updated 2 months ago
• ahoarfrost / fastBio
  Deep learning library for biological sequences. Extension of Fastai and Pytorch.
  ☆40Updated last month
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆26Updated 2 years ago
• leonweber / pedl
  Search the biomedical literature for protein interactions and protein associations
  ☆11Updated last year
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated 11 months ago
• bowang-lab / Orthrus
  Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…
  ☆63Updated 3 months ago
• netlab-ku / pyPARAGON
  PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference
  ☆11Updated 6 months ago
• midas-wyss / sweettalk
  Deep learning-based language model for glycan sequences
  ☆16Updated 5 years ago
• p-koo / evoaug
  Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics
  ☆21Updated last year
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆12Updated 6 years ago
• debbiemarkslab / MuE
  A package for making MuE observation models in Edward2.
  ☆13Updated 3 years ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆40Updated 2 weeks ago
• hzi-bifo / epitope-prediction
  ☆17Updated 11 months ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated last month
• hetio / xswap
  Python library (C++ backend) for degree-preserving network randomization
  ☆13Updated 5 years ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆82Updated 2 weeks ago