galaxy001 / pirsView external linksLinks
profile basd Illumina pair-end Reads Simulator
☆28Dec 18, 2023Updated 2 years ago
Alternatives and similar repositories for pirs
Users that are interested in pirs are comparing it to the libraries listed below
Sorting:
- Whole Genome Simulator for Next-Generation Sequencing☆102Dec 27, 2025Updated last month
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 12 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 6 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- simuG: a general-purpose genome simulator☆99Jun 18, 2025Updated 7 months ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 6 months ago
- ☆11Apr 10, 2016Updated 9 years ago
- NeXML is an exchange standard for representing phyloinformatic data.☆15Feb 23, 2017Updated 8 years ago
- A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)☆14Aug 31, 2016Updated 9 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 8 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- Genome Assembly 102☆17Apr 23, 2025Updated 9 months ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33May 20, 2020Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- ☆17Oct 7, 2024Updated last year
- Wessim: Whole Exome Sequencing SIMulator using in silico exome capture☆15Aug 18, 2020Updated 5 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Feb 2, 2026Updated last week
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- Centromere mapping and annotation pipeline☆22Updated this week
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ☆18Feb 25, 2022Updated 3 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Jan 14, 2026Updated last month
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago