ACEnglish / adottoLinks
Working space for the GIAB TR benchmarking project
☆21Updated 8 months ago
Alternatives and similar repositories for adotto
Users that are interested in adotto are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- ☆21Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆34Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆30Updated 10 months ago
- Tumor-normal variant calling workflow using HiFi reads☆20Updated last month
- ☆30Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks☆16Updated 2 years ago
- Short Tandem Repeat disease loci resource☆18Updated last week
- SV calling for diploid assemblies☆27Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- SV genotyping with long reads☆39Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- ☆17Updated last year
- ☆19Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- Easy genomic regions for short-read variant calling☆15Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago