MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
☆18Nov 30, 2022Updated 3 years ago
Alternatives and similar repositories for mercat
Users that are interested in mercat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆11Apr 8, 2025Updated last year
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein seq…☆19Oct 4, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 9 months ago
- Just another minhash implementation.☆13Sep 14, 2026Updated 3 weeks ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Sep 7, 2026Updated last month
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 2 months ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- Index kmtricks bf matrices☆49Oct 6, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package for simulating spreading phenomena in complex networks☆27Mar 16, 2026Updated 6 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 4 months ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆20Sep 21, 2018Updated 8 years ago
- Evolution simulator with extinct lineages☆25Apr 3, 2025Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- ☆12Jan 27, 2022Updated 4 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆52Feb 8, 2022Updated 4 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Updated this week
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- complex Chaos Game Representation for DNA sequences☆22Apr 3, 2025Updated last year
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago
- K-mer Counting for Biological Sequence Analysis☆29Jan 23, 2026Updated 8 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 7 months ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- A graph visualisation tool targeted at persistent homology applications.☆12Jul 28, 2020Updated 6 years ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆19Aug 30, 2018Updated 8 years ago
- A library implementing various linear sparse fitting techniques. Uses Tensorflow for running on GPU.☆14Dec 25, 2016Updated 9 years ago
- ☆13Jan 31, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python routines for generating simple models of DNA☆13Oct 19, 2025Updated 11 months ago
- Accompanying scripts and material to conduct a temporal EFA on ERP data as explained in Scharf, Widmann, Bonmassar & Wetzel (2021). Pleas…☆10Aug 5, 2022Updated 4 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Oct 5, 2026Updated last week
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆84Oct 22, 2019Updated 6 years ago
- ☆10Mar 24, 2025Updated last year
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 4 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year