pnnl / mercatLinks
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
☆18Updated 2 years ago
Alternatives and similar repositories for mercat
Users that are interested in mercat are comparing it to the libraries listed below
Sorting:
- MicrobeDirectory 2.0☆22Updated 5 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Updated last month
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- ☆29Updated last year
- ☆23Updated 6 years ago
- Inference of putative transmission phylogenetic clusters☆12Updated 5 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 8 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- simple and not slow ORF caller☆21Updated 3 weeks ago
- A message queue for genomic surveillance☆19Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Updated 3 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Deep learning for Metagenome Assembly Error Detection☆25Updated 4 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Master of Pores 2☆23Updated 11 months ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Mutation tracker for microbial genomes☆14Updated 5 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 3 weeks ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- Annotating principal splice isoforms☆16Updated last week
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated 4 months ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated 3 weeks ago