YJulyXing / SECNVsLinks
A tool for simulating CNVs for WES data. It simulates rearranged genome(s), short reads (fastq) and BAM file(s) automatically in one single command.
☆17Updated 5 years ago
Alternatives and similar repositories for SECNVs
Users that are interested in SECNVs are comparing it to the libraries listed below
Sorting:
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Tumor Mutational Burden☆63Updated 5 months ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- ☆54Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 8 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- Burden testing against public controls☆50Updated last year
- Characterization of Germline variants☆99Updated 3 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- ☆22Updated last month
- ☆43Updated last year
- Battenberg R package for subclonal copynumber estimation☆93Updated last month
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 7 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- CN-Learn☆30Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 9 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 3 months ago