quantumbrake / cayenneLinks
Python package for stochastic simulations
☆18Updated last month
Alternatives and similar repositories for cayenne
Users that are interested in cayenne are comparing it to the libraries listed below
Sorting:
- Python Environment for Modeling and Simulating Biological Systems☆122Updated last month
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆29Updated 3 years ago
- ☆25Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Release of the whole cell E. coli model.☆68Updated 8 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆39Updated last month
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 3 months ago
- A python toolbox for 13C metabolic flux analysis☆23Updated last month
- Symbolic Kinetic Models with Python☆32Updated 2 months ago
- Python framework for Systems Biology modeling☆184Updated last month
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 11 months ago
- Pyro models of SARS-CoV-2 variants☆78Updated last year
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 5 months ago
- Metabolic Engineering Workbench☆40Updated last year
- Standard reaction Gibbs energy estimation for biochemical reactions☆17Updated 6 years ago
- Chromosome polymer simulations and in silico capture experiments☆51Updated last month
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- Unified biological sequence manipulation in Python☆207Updated last year
- Codon usage tables in code-friendly format + Python bindings☆38Updated 3 months ago
- Modeling toolkit for biochemical simulation☆76Updated 7 months ago